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Xist凝聚物:治疗干预的前景

Xist condensates: perspectives for therapeutic intervention.

作者信息

Perotti Irene, Broglia Laura, Tartaglia Gian Gaetano, Cerase Andrea

机构信息

Unit of Cell and Developmental Biology, Department of Biology, Università di Pisa, Strada Statale dell'Abetone Brennero, 4, Pisa, 56123, Italy.

RNA Systems Biology Lab, Center for Human Technologies, Istituto Italiano di Tecnologia, Via Enrico Melen, 83, Genoa, 16152, Italy.

出版信息

Genome Biol. 2025 Jul 21;26(1):215. doi: 10.1186/s13059-025-03666-8.

DOI:10.1186/s13059-025-03666-8
PMID:40691806
Abstract

X-chromosome inactivation (XCI) is a crucial mechanism of dosage compensation in female mammals ensuring that genes from only one X chromosome are expressed, initiated through expression of the long noncoding RNA Xist. Recent evidence underscores the significance of molecular crowding-most likely via liquid-liquid phase separation (LLPS)-in forming Xist RNA-driven condensates critical for establishing and sustaining the silenced state. By integrating existing knowledge and emerging ideas, we provide a comprehensive perspective on the molecular underpinnings of XCI and outline how manipulation of LLPS-based mechanisms offers new avenues for novel therapeutic approaches.

摘要

X染色体失活(XCI)是雌性哺乳动物剂量补偿的关键机制,可确保仅一条X染色体上的基因得以表达,该过程通过长链非编码RNA Xist的表达启动。最近的证据强调了分子拥挤——很可能是通过液-液相分离(LLPS)——在形成由Xist RNA驱动的凝聚物中的重要性,这些凝聚物对于建立和维持沉默状态至关重要。通过整合现有知识和新出现的观点,我们对XCI的分子基础提供了全面的视角,并概述了基于LLPS的机制的操纵如何为新的治疗方法提供新途径。

相似文献

1
Xist condensates: perspectives for therapeutic intervention.Xist凝聚物:治疗干预的前景
Genome Biol. 2025 Jul 21;26(1):215. doi: 10.1186/s13059-025-03666-8.
2
X chromosome inactivation in mammals: general principles and species-specific considerations.哺乳动物中的X染色体失活:一般原则及物种特异性考量
EMBO Rep. 2025 Jun 19. doi: 10.1038/s44319-025-00499-1.
3
Activation of Xist by an evolutionarily conserved function of KDM5C demethylase.KDM5C 去甲基酶的一种进化保守功能激活 Xist。
Nat Commun. 2022 May 11;13(1):2602. doi: 10.1038/s41467-022-30352-1.
4
Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation.Spen 连接 RNA 介导的内源性逆转录病毒沉默和 X 染色体失活。
Elife. 2020 May 7;9:e54508. doi: 10.7554/eLife.54508.
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Xist RNA in action: Past, present, and future.Xist RNA 的作用:过去、现在和未来。
PLoS Genet. 2019 Sep 19;15(9):e1008333. doi: 10.1371/journal.pgen.1008333. eCollection 2019 Sep.
6
The Role of Xist in X-Chromosome Dosage Compensation.Xist 在 X 染色体剂量补偿中的作用。
Trends Cell Biol. 2018 Dec;28(12):999-1013. doi: 10.1016/j.tcb.2018.05.005. Epub 2018 Jun 14.
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The Molecular and Nuclear Dynamics of X-Chromosome Inactivation.X 染色体失活的分子与核动力学
Cold Spring Harb Perspect Biol. 2022 May 17;14(4):a040196. doi: 10.1101/cshperspect.a040196.
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Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression.Chd8 通过精细调控 Xist 表达来调节小鼠 X 染色体失活。
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KDM6A facilitates Xist upregulation at the onset of X inactivation.KDM6A在X染色体失活开始时促进Xist上调。
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本文引用的文献

1
Recessive epistasis of a synonymous mutation confers cucumber domestication through epitranscriptomic regulation.同义突变的隐性上位效应通过表观转录组调控赋予黄瓜驯化特性。
Cell. 2025 Aug 21;188(17):4810. doi: 10.1016/j.cell.2025.07.006. Epub 2025 Jul 15.
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Phase separation paints Xi with Xist.相分离用Xist标记Xi。
Cell Res. 2025 Apr 14. doi: 10.1038/s41422-025-01116-5.
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catGRANULE 2.0: accurate predictions of liquid-liquid phase separating proteins at single amino acid resolution.catGRANULE 2.0:在单氨基酸分辨率下对液-液相分离蛋白进行准确预测。
Genome Biol. 2025 Feb 20;26(1):33. doi: 10.1186/s13059-025-03497-7.
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A biophysical basis for the spreading behavior and limited diffusion of Xist.Xist基因扩散行为及有限扩散的生物物理基础。
Cell. 2025 Feb 20;188(4):978-997.e25. doi: 10.1016/j.cell.2024.12.004. Epub 2025 Jan 16.
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Recruitment of chromatin remodelers by XIST B-repeat region is variably dependent on HNRNPK.XIST B重复区域对染色质重塑因子的招募在不同程度上依赖于HNRNPK。
Hum Mol Genet. 2025 Feb 1;34(3):229-238. doi: 10.1093/hmg/ddae173.
6
RNA-driven phase transitions in biomolecular condensates.RNA 驱动的生物分子凝聚相相变。
Mol Cell. 2024 Oct 3;84(19):3692-3705. doi: 10.1016/j.molcel.2024.09.005.
7
Preclinical studies of gene replacement therapy for CDKL5 deficiency disorder.针对CDKL5缺乏症的基因替代疗法的临床前研究。
Mol Ther. 2024 Oct 2;32(10):3331-3345. doi: 10.1016/j.ymthe.2024.07.012. Epub 2024 Jul 20.
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XIST dampens X chromosome activity in a SPEN-dependent manner during early human development.XIST 通过依赖于 SPEN 的方式在人类早期胚胎发育中抑制 X 染色体活性。
Nat Struct Mol Biol. 2024 Oct;31(10):1589-1600. doi: 10.1038/s41594-024-01325-3. Epub 2024 Jun 4.
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Phase Separation Enhanced PROTAC for Highly Efficient Protein Degradation.相分离增强的 PROTAC 用于高效蛋白质降解。
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Spatial orchestration of the genome: topological reorganisation during X-chromosome inactivation.基因组的空间协调:X 染色体失活过程中的拓扑重排。
Curr Opin Genet Dev. 2024 Jun;86:102198. doi: 10.1016/j.gde.2024.102198. Epub 2024 Apr 24.