• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

类风湿性关节炎白细胞介素-1抑制剂植物成分的计算机模拟鉴定:分子对接、ADMET分析及分子动力学模拟

In silico identification of phytoconstituents from as interleukin-1 inhibitors for rheumatoid arthritis: molecular docking, ADMET profiling, and molecular dynamics simulation.

作者信息

Martin Darius R, Ajmal Antoinette, Meyer Mervin, Madiehe Abram M

机构信息

Nanobiotechnology Research Group, Department of Biotechnology, Faculty of Natural Sciences, University of the Western Cape, Bellville, South Africa.

Department of Science, Technology and Innovation/TIA Nanotechnology Platform, Department of Biotechnology, Faculty of Natural Sciences, University of the Western Cape, Bellville, South Africa.

出版信息

In Silico Pharmacol. 2025 Jul 22;13(2):106. doi: 10.1007/s40203-025-00386-6. eCollection 2025.

DOI:10.1007/s40203-025-00386-6
PMID:40697669
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12279688/
Abstract

In this study computational methods were used to explore the anti-inflammatory properties of () extracts; focusing on their activity against pro-inflammatory cytokine, interleukin-1 (IL-1). Molecular docking was performed on 18 phytoconstituents using AutoDock VinaXB. The study identified five compounds (CIDs 8122, 33934, 605626, 638072, 5363269) with high affinity for IL-1. Notably, CID 638072 demonstrated superior binding affinity compared to standard controls such as thalidomide. Pharmacokinetic and toxicity profiles were assessed using SwissADME and pkCSM which showed that all these compounds met acceptable criteria as promising anti-inflammatory agents. Molecular dynamics simulations with GROMACS (version 2019) confirmed the stability and interaction dynamics of these compounds, which support the docking results. The findings validate the traditional medicinal use of for the treatment of inflammation, suggesting that CID 638072 holds significant potential for further development into a natural anti-inflammatory therapeutic. This research provides clues for the therapeutic applications of , advancing the search for effective natural remedies for the treatment of inflammation. Further experimental validation is necessary to transition this study from computational predictions to clinical applications.

摘要

在本研究中,采用计算方法探索了()提取物的抗炎特性;重点关注其对促炎细胞因子白细胞介素 -1(IL -1)的活性。使用AutoDock VinaXB对18种植物成分进行了分子对接。该研究确定了对IL -1具有高亲和力的五种化合物(化合物识别码8122、33934、605626、638072、5363269)。值得注意的是,与沙利度胺等标准对照相比,化合物识别码638072表现出卓越的结合亲和力。使用SwissADME和pkCSM评估了药代动力学和毒性概况,结果表明所有这些化合物均符合作为有前景的抗炎剂的可接受标准。使用GROMACS(2019版)进行的分子动力学模拟证实了这些化合物的稳定性和相互作用动力学,这支持了对接结果。这些发现验证了()在传统医学中用于治疗炎症的用途,表明化合物识别码638072在进一步开发成为天然抗炎疗法方面具有巨大潜力。本研究为()的治疗应用提供了线索,推动了寻找治疗炎症的有效天然药物的研究。要将本研究从计算预测转化为临床应用,还需要进一步的实验验证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/61bbf5e6f488/40203_2025_386_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/98ebed64a5e2/40203_2025_386_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/12f63e1c0d5c/40203_2025_386_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/443c5c0e3ae2/40203_2025_386_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/61bbf5e6f488/40203_2025_386_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/98ebed64a5e2/40203_2025_386_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/12f63e1c0d5c/40203_2025_386_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/443c5c0e3ae2/40203_2025_386_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/62c8/12279688/61bbf5e6f488/40203_2025_386_Fig4_HTML.jpg

相似文献

1
In silico identification of phytoconstituents from as interleukin-1 inhibitors for rheumatoid arthritis: molecular docking, ADMET profiling, and molecular dynamics simulation.类风湿性关节炎白细胞介素-1抑制剂植物成分的计算机模拟鉴定:分子对接、ADMET分析及分子动力学模拟
In Silico Pharmacol. 2025 Jul 22;13(2):106. doi: 10.1007/s40203-025-00386-6. eCollection 2025.
2
Anti-inflammatory potential of Grewialin from Grewia optiva: insights from molecular docking, ADMET, DFT, and in-vitro studies.光叶扁担杆中扁担杆林的抗炎潜力:来自分子对接、ADMET、密度泛函理论及体外研究的见解
J Comput Aided Mol Des. 2025 Jul 23;39(1):56. doi: 10.1007/s10822-025-00632-1.
3
Systemic treatments for metastatic cutaneous melanoma.转移性皮肤黑色素瘤的全身治疗
Cochrane Database Syst Rev. 2018 Feb 6;2(2):CD011123. doi: 10.1002/14651858.CD011123.pub2.
4
Exploring Type II Diabetes Inhibitors from Genus Daphne Plant-species: An Integrated Computational Study.探索瑞香属植物物种中的II型糖尿病抑制剂:一项综合计算研究。
Comb Chem High Throughput Screen. 2025;28(8):1413-1442. doi: 10.2174/0113862073262227231005074024.
5
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.系统性药理学治疗慢性斑块状银屑病:网络荟萃分析。
Cochrane Database Syst Rev. 2021 Apr 19;4(4):CD011535. doi: 10.1002/14651858.CD011535.pub4.
6
Network pharmacology and in-silico studies for molecular mechanisms of analgesic, anti-inflammatory and anti-arthritic effects of Withania somnifera (L.) Dunal phytoconstituents.睡茄植物成分镇痛、抗炎和抗关节炎作用分子机制的网络药理学及计算机模拟研究
J Ayurveda Integr Med. 2025 Jun 26;16(4):101088. doi: 10.1016/j.jaim.2024.101088.
7
Safety of non-steroidal anti-inflammatory drugs, including aspirin and paracetamol (acetaminophen) in people receiving methotrexate for inflammatory arthritis (rheumatoid arthritis, ankylosing spondylitis, psoriatic arthritis, other spondyloarthritis).非甾体抗炎药(包括阿司匹林和对乙酰氨基酚)在接受甲氨蝶呤治疗炎性关节炎(类风湿关节炎、强直性脊柱炎、银屑病关节炎、其他脊柱关节炎)患者中的安全性。
Cochrane Database Syst Rev. 2011 Nov 9(11):CD008872. doi: 10.1002/14651858.CD008872.pub2.
8
In-silico identification of novel inhibitors of human androgen receptors and prostrate-specific membrane antigen: a comprehensive target-based molecular docking, molecular dynamics simulation, and ADME-toxicity studies.人雄激素受体和前列腺特异性膜抗原新型抑制剂的计算机虚拟鉴定:基于靶点的全面分子对接、分子动力学模拟及ADME毒性研究
In Silico Pharmacol. 2025 Jun 13;13(2):88. doi: 10.1007/s40203-025-00375-9. eCollection 2025.
9
Systemic pharmacological treatments for chronic plaque psoriasis: a network meta-analysis.慢性斑块状银屑病的全身药理学治疗:一项网状Meta分析。
Cochrane Database Syst Rev. 2020 Jan 9;1(1):CD011535. doi: 10.1002/14651858.CD011535.pub3.
10
Molecular mechanisms of phytoconstituents from selected Egyptian plants against non-small cell lung cancer using integrated in vitro network pharmacology and molecular docking approach.采用体外整合网络药理学和分子对接方法研究埃及特定植物的植物成分抗非小细胞肺癌的分子机制。
Naunyn Schmiedebergs Arch Pharmacol. 2025 Jan 31. doi: 10.1007/s00210-025-03834-4.

引用本文的文献

1
The future of pharmaceuticals: Artificial intelligence in drug discovery and development.制药的未来:药物研发中的人工智能
J Pharm Anal. 2025 Aug;15(8):101248. doi: 10.1016/j.jpha.2025.101248. Epub 2025 Feb 26.

本文引用的文献

1
In Silico Structural Modeling and Binding Site Analysis of Cerebroside Sulfotransferase (CST): A Therapeutic Target for Developing Substrate Reduction Therapy for Metachromatic Leukodystrophy.脑苷脂硫酸转移酶(CST)的计算机结构建模与结合位点分析:用于开发异染性脑白质营养不良底物减少疗法的治疗靶点
ACS Omega. 2024 Feb 23;9(9):10748-10768. doi: 10.1021/acsomega.3c09462. eCollection 2024 Mar 5.
2
Molecular modeling and simulation studies of SELEX-derived high-affinity DNA aptamers to the Ebola virus nucleoprotein.对经指数富集的配体系统进化技术筛选得到的埃博拉病毒核蛋白高亲和力DNA适配体的分子建模与模拟研究
J Biomol Struct Dyn. 2025 Jun;43(9):4405-4422. doi: 10.1080/07391102.2024.2302922. Epub 2024 Jan 13.
3
Fluorinated curcumin derivative (Shiga-Y6) modulates the level of thioredoxin-interacting protein (TXNIP) in a mouse model of diabetes.
氟化姜黄素衍生物(Shiga-Y6)调节糖尿病小鼠模型中硫氧还蛋白相互作用蛋白(TXNIP)的水平。
Biochem Biophys Res Commun. 2024 Jan 29;694:149392. doi: 10.1016/j.bbrc.2023.149392. Epub 2023 Dec 19.
4
TNFpred: a classification model to predict TNF-α inhibitors.TNFpred:一种用于预测 TNF-α 抑制剂的分类模型。
Mol Divers. 2024 Jun;28(3):1697-1707. doi: 10.1007/s11030-023-10685-9. Epub 2023 Jul 3.
5
Neural stem cells transplantation combined with ethyl stearate improve PD rats motor behavior by promoting NSCs migration and differentiation.神经干细胞移植联合硬脂酸乙酯通过促进神经干细胞迁移和分化改善 PD 大鼠的运动行为。
CNS Neurosci Ther. 2023 Jun;29(6):1571-1584. doi: 10.1111/cns.14119. Epub 2023 Mar 16.
6
Natural phytocompounds physalin D, withaferin a and withanone target L-asparaginase of : a molecular dynamics study.天然植物化合物酸浆苦素D、睡茄素A和睡茄酮靶向:分子动力学研究
J Biomol Struct Dyn. 2023 Apr;41(7):2645-2659. doi: 10.1080/07391102.2022.2036239. Epub 2022 Feb 8.
7
Discovery of phyto-compounds as novel inhibitors against and protein through virtual screening and molecular modelling.通过虚拟筛选和分子建模发现植物化合物作为新型 和 蛋白抑制剂。
J Biomol Struct Dyn. 2023 Mar;41(4):1267-1280. doi: 10.1080/07391102.2021.2019125. Epub 2021 Dec 28.
8
In Silico Investigation of Phytoconstituents of Medicinal Herb '' Against SARS-CoV-2 by Molecular Docking and Molecular Dynamics Analysis.通过分子对接和分子动力学分析对药用植物“ ”的植物成分抗新型冠状病毒2进行计算机模拟研究。 (注:原文中“Medicinal Herb ''”部分缺失具体植物名称)
Results Chem. 2021 Sep 24:100199. doi: 10.1016/j.rechem.2021.100199.
9
gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS.gmx_MMPBSA:一种使用GROMACS进行终态自由能计算的新工具。
J Chem Theory Comput. 2021 Oct 12;17(10):6281-6291. doi: 10.1021/acs.jctc.1c00645. Epub 2021 Sep 29.
10
Development of Effective Therapeutic Molecule from Natural Sources against Coronavirus Protease.从天然来源开发针对冠状病毒蛋白酶的有效治疗分子。
Int J Mol Sci. 2021 Aug 30;22(17):9431. doi: 10.3390/ijms22179431.