Liu Chang, van Ee Thomas, Janssen Jurriaan, Rodríguez Ernesto, Kim Yongsoo, Radonic Teodora, van Beusechem Victor W, Fransen Marieke F, Bahce Idris, van Kooyk Yvette
Pulmonary Medicine, Amsterdam UMC location Vrije Universiteit Amsterdam, Amsterdam, Netherlands.
Molecular Cell Biology and Immunology, Amsterdam UMC location Vrije Universiteit Amsterdam, Amsterdam, Netherlands.
Front Oncol. 2025 Jul 11;15:1601368. doi: 10.3389/fonc.2025.1601368. eCollection 2025.
BACKGROUND: Aberrant glycosylation is associated with cancer progression and patient survival, of which the driving genes could act as biomarkers. Our objective was to characterize the expression of glycosylation-related genes to elucidate the heterogeneity between lung adenocarcinoma (LUAD) and lung squamous cell carcinoma (LUSC), and their prospective diagnostic utility. METHODS: mRNA expression data for all glyco-relevant genes was collected from 553 LUSC and 576 LUAD patients from the TCGA dataset. Differential gene expression analysis and UMAP dimension reduction analysis were used to compare mRNA expression in LUAD and LUSC. Selected genes were further confirmed through immunohistochemistry of tissue biopsies. Public single-cell RNA sequencing (scRNA-seq) data from 72 LUSC and 163 LUAD patients was retrieved to study cell type-specific expression. Galectin-7 was measured in patients' plasma by ELISA. Univariate Cox proportional regression model was used for prognostic marker detection. RESULTS: Our analysis revealed genes differentially expressed respectively in LUSC and LUAD compared to normal lung samples. We focused on genes exhibiting high expression in LUSC (, , and ) and in LUAD (, , and ). Key glyco-related signatures were mostly observed in the malignant cell compartment. Galectin-7 concentration in plasma was upregulated in LUSC patients, but not LUAD patients. 67 genes in LUAD and 23 genes in LUSC were strongly linked to patient survival. CONCLUSION: We identified several glyco-associated biomarkers in NSCLC, including Galectin-4, Galectin-7, MUC21, ST6GALNAC1, and ST6GALNAC2. Galectin-7 is a promising clinical biomarker for detection in plasma.
背景:异常糖基化与癌症进展及患者生存率相关,其驱动基因可作为生物标志物。我们的目标是表征糖基化相关基因的表达,以阐明肺腺癌(LUAD)和肺鳞状细胞癌(LUSC)之间的异质性及其潜在的诊断效用。 方法:从TCGA数据集中收集了553例LUSC和576例LUAD患者的所有糖相关基因的mRNA表达数据。采用差异基因表达分析和UMAP降维分析来比较LUAD和LUSC中的mRNA表达。通过组织活检的免疫组织化学进一步确认所选基因。检索了来自72例LUSC和163例LUAD患者的公共单细胞RNA测序(scRNA-seq)数据,以研究细胞类型特异性表达。通过ELISA法检测患者血浆中的半乳糖凝集素-7。使用单变量Cox比例回归模型进行预后标志物检测。 结果:我们的分析揭示了与正常肺样本相比,LUSC和LUAD中分别差异表达的基因。我们重点关注在LUSC(、和)和LUAD(、和)中高表达的基因。关键的糖相关特征大多在恶性细胞区室中观察到。LUSC患者血浆中的半乳糖凝集素-7浓度上调,而LUAD患者则未上调。LUAD中的67个基因和LUSC中的23个基因与患者生存率密切相关。 结论:我们在非小细胞肺癌中鉴定了几种糖相关生物标志物,包括半乳糖凝集素-4、半乳糖凝集素-7、MUC21、ST6GALNAC1和ST6GALNAC2。半乳糖凝集素-7是一种有前景的血浆检测临床生物标志物。
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