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肺腺癌中BTK表达的生物信息学分析:对免疫浸润、预后生物标志物和治疗靶点的意义

Bioinformatics analysis of BTK expression in lung adenocarcinoma: implications for immune infiltration, prognostic biomarkers, and therapeutic targeting.

作者信息

Jiao Lijun, Tao Yujian, Ding Huizhen, Wu Feng, Liu Yantong, Li Chuang, Li Feifei

机构信息

Department of Respiratory and Critical Care Medicine, The Affiliated Hospital of Yangzhou University, Yangzhou, China.

Department of Computer and Information Engineering, Kunsan National University, Gunsan, 54150 Republic of Korea.

出版信息

3 Biotech. 2024 Sep;14(9):215. doi: 10.1007/s13205-024-04053-z. Epub 2024 Aug 28.

Abstract

In recent years, as more and more lung-cancer patients have been treated with immunotherapeutic agents, their survival has been prolonged compared to before. It is well known that BTK (Bruton's tyrosine kinase) is predominantly found in cells of the hematopoietic system. However, there is a distinct lack of literature on BTK expression in lung adenocarcinoma (LUAD) patients and its effect on the immune microenvironment. Consequently, the main goal of this investigation was to analyze how BTK expression in lung adenocarcinoma affects its progression, along with its prognostic significance, through the utilization of bioinformatics online resources and publicly available databases. Data on the sequencing results and clinical records of lung adenocarcinoma patients were gathered from The Cancer Genome Atlas (TCGA) database. Based on the expression level of BKT, TCGA categorized lung adenocarcinoma patients into BTK high-expression and low-expression groups. We investigated the effects of BKT on clinicopathologic, genomic, and immunologic characteristics of lung adenocarcinoma patients. We analyzed BTK mRNA expression in tumors and normal tissues using two key resources: Tumor Immuno Estimation Resource 2.0 (TIMER 2.0) and Gene Expression Profiling Interactive Analysis 2 (GEPIA 2). We analyzed the prognosis of the patients using GEPIA2 and validated the results using univariate and multivariate analyses. In addition, we assessed BTK protein expression by Human Protein Atlas (HPA). We sought to elucidate the clinical prognostic significance of BTK in The TCGA using the online tool GEPIA 2. Furthermore, to clarify the biologic roles and pathways linked to BTK, we conducted a genomic enrichment analysis of the information. To predict the proportion of various immune cell infiltrations in the immune microenvironment of lung adenocarcinoma patients diagnosed in the TCGA database, we performed an analysis using the TIMER online tool. Using TIMER and CIBERSORT, the correlation between genes co-expressed with BTK and the corresponding tumor-infiltrating immune cells was explored; finally, the relationship between BTK expression and immune infiltration and immune checkpoints in the TMB group and the high and low groups was analyzed by R language analysis using the TCGA database. The expression of BTK provides some hints about the prognosis of the patients. The high expression of BTK is involved in immune response regulation signaling pathways, leukocyte-mediated immunity, leukocyte intercellular adhesion, graft rejection, and complement. Analysis of the GEPIA 2 database showed that BTK was co-expressed with the genes FGD2, SASH3, NCKAP1L, CD53, ARHGAP30 and LPXN. Increased expression of the above-mentioned genes resulted in increased proportions of CD8 + T cells, memory CD4 + T cells, B cells, macrophages, and dendritic cells, and decreased proportions of Treg cells and TH2 cells. In addition, our study revealed a strong positive correlation between various key immune checkpoints (e.g., PDCD1, CD274, PDCD1LG2, CTLA4, HAVCR2, LAG3, TIGIT, and SIGLEC15) and BTK expression. In conclusion, increased BTK expression in lung adenocarcinoma is closely associated with prolonged survival of lung-cancer patients. Moreover, the genes classified under the BTK high-expression group exhibit significant enrichment in immune-related pathways, suggesting a potential impact on the tumor microenvironment. We investigated the potential of BTK as a tumor suppressor gene in predicting prolonged patient survival. In addition, we further investigated the possibility that BTK further affects the immunotherapeutic response of patients by influencing the microenvironment of tumor immune infiltration, but the relevant mechanisms remain to be further studied.

摘要

近年来,随着越来越多的肺癌患者接受免疫治疗药物治疗,他们的生存期较之前有所延长。众所周知,布鲁顿酪氨酸激酶(BTK)主要存在于造血系统细胞中。然而,关于肺腺癌(LUAD)患者中BTK表达及其对免疫微环境影响的文献明显匮乏。因此,本研究的主要目的是通过利用生物信息学在线资源和公开可用数据库,分析肺腺癌中BTK表达如何影响其进展及其预后意义。从癌症基因组图谱(TCGA)数据库收集了肺腺癌患者的测序结果和临床记录数据。基于BTK的表达水平,TCGA将肺腺癌患者分为BTK高表达组和低表达组。我们研究了BTK对肺腺癌患者临床病理、基因组和免疫特征的影响。我们使用两个关键资源:肿瘤免疫评估资源2.0(TIMER 2.0)和基因表达谱交互分析2(GEPIA 2),分析了肿瘤组织和正常组织中BTK mRNA的表达。我们使用GEPIA2分析了患者的预后,并通过单因素和多因素分析验证了结果。此外,我们通过人类蛋白质图谱(HPA)评估了BTK蛋白的表达。我们试图使用在线工具GEPIA 2阐明TCGA中BTK的临床预后意义。此外,为了阐明与BTK相关的生物学作用和途径,我们对这些信息进行了基因组富集分析。为了预测在TCGA数据库中诊断的肺腺癌患者免疫微环境中各种免疫细胞浸润的比例,我们使用TIMER在线工具进行了分析。使用TIMER和CIBERSORT,探索了与BTK共表达的基因与相应肿瘤浸润免疫细胞之间的相关性;最后,使用R语言分析通过TCGA数据库分析了TMB组以及高、低组中BTK表达与免疫浸润和免疫检查点之间的关系。BTK的表达为患者的预后提供了一些线索。BTK的高表达参与免疫反应调节信号通路、白细胞介导的免疫、白细胞细胞间粘附、移植排斥和补体。对GEPIA 2数据库的分析表明,BTK与FGD2、SASH3、NCKAP1L、CD53、ARHGAP30和LPXN基因共表达。上述基因表达的增加导致CD8 + T细胞、记忆性CD4 + T细胞, B细胞、巨噬细胞和树突状细胞的比例增加,而调节性T细胞和TH2细胞的比例降低。此外,我们的研究揭示了各种关键免疫检查点(如PDCD1、CD274、PDCD1LG2、CTLA4、HAVCR2、LAG3、TIGIT和SIGLEC15)与BTK表达之间存在强正相关。总之,肺腺癌中BTK表达的增加与肺癌患者生存期的延长密切相关。此外,BTK高表达组中的基因在免疫相关途径中表现出显著富集,表明对肿瘤微环境有潜在影响。我们研究了BTK作为肿瘤抑制基因在预测患者生存期延长方面的潜力。此外,我们进一步研究了BTK通过影响肿瘤免疫浸润微环境进一步影响患者免疫治疗反应的可能性,但相关机制仍有待进一步研究。

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Immunotherapeutic approaches for small-cell lung cancer.小细胞肺癌的免疫治疗方法。
Nat Rev Clin Oncol. 2020 May;17(5):300-312. doi: 10.1038/s41571-019-0316-z. Epub 2020 Feb 13.

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