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睡眠剥夺小鼠大脑皮层细胞特异性转录组学和细胞核蛋白质组学的综合分析。

An integrative analysis of cell-specific transcriptomics and nuclear proteomics of sleep-deprived mouse cerebral cortex.

作者信息

Jha Pawan K, Valekunja Utham K, Reddy Akhilesh B

机构信息

Department of Systems Pharmacology & Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.

Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.

出版信息

Sci Rep. 2025 Jul 29;15(1):27677. doi: 10.1038/s41598-025-10783-8.

DOI:10.1038/s41598-025-10783-8
PMID:40730573
Abstract

Sleep regulation follows a homeostatic pattern. The mammalian cerebral cortex is the repository of homeostatic sleep drive and neurons and astrocytes of the cortex are principal responders of sleep need. The molecular mechanisms by which these two cell types respond to sleep loss are not yet clearly understood. By combining cell-type specific transcriptomics and nuclear proteomics we investigated how sleep loss affects the cellular composition and molecular profiles of these two cell types in a focused approach. The results indicate that sleep deprivation regulates gene expression and nuclear protein abundance in a cell-type-specific manner. Our integrated multi-omics analysis suggests that this distinction arises because neurons and astrocytes employ different gene regulatory strategies under accumulated sleep pressure. These findings provide a comprehensive view of the effects of sleep deprivation on gene regulation in neurons and astrocytes.

摘要

睡眠调节遵循一种稳态模式。哺乳动物的大脑皮层是稳态睡眠驱动力的储存库,皮层中的神经元和星形胶质细胞是睡眠需求的主要响应者。这两种细胞类型对睡眠缺失做出反应的分子机制尚未完全清楚。通过结合细胞类型特异性转录组学和细胞核蛋白质组学,我们以一种聚焦的方式研究了睡眠缺失如何影响这两种细胞类型的细胞组成和分子特征。结果表明,睡眠剥夺以细胞类型特异性的方式调节基因表达和细胞核蛋白丰度。我们的综合多组学分析表明,这种差异的出现是因为神经元和星形胶质细胞在累积的睡眠压力下采用了不同的基因调控策略。这些发现提供了关于睡眠剥夺对神经元和星形胶质细胞基因调控影响的全面观点。

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本文引用的文献

1
Sleep deprivation disrupts memory: here's why.睡眠剥夺会扰乱记忆:原因如下。
Nature. 2024 Jun;630(8017):542. doi: 10.1038/d41586-024-01732-y.
2
Single-nucleus RNA-seq identifies one galanin neuronal subtype in mouse preoptic hypothalamus activated during recovery from sleep deprivation.单细胞 RNA 测序鉴定出在睡眠剥夺恢复过程中激活的小鼠下丘脑视前区的一种甘丙肽神经元亚型。
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SpiB regulates the expression of B-cell-related genes and increases the longevity of memory B cells.
SpiB 调节 B 细胞相关基因的表达,并延长记忆 B 细胞的寿命。
Front Immunol. 2023 Oct 27;14:1250719. doi: 10.3389/fimmu.2023.1250719. eCollection 2023.
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Spatial transcriptomics reveals unique gene expression changes in different brain regions after sleep deprivation.空间转录组学揭示了睡眠剥夺后不同脑区独特的基因表达变化。
Nat Commun. 2023 Nov 4;14(1):7095. doi: 10.1038/s41467-023-42751-z.
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FUS regulates the alternative splicing of cell proliferation genes related to atherosclerosis.FUS 调节与动脉粥样硬化相关的细胞增殖基因的可变剪接。
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Sleep deprivation alleviates depression-like behaviors in mice via inhibiting immune and inflammatory pathways and improving neuroplasticity.睡眠剥夺通过抑制免疫和炎症途径以及改善神经可塑性来减轻小鼠的抑郁样行为。
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Spi1 regulates the microglial/macrophage inflammatory response via the PI3K/AKT/mTOR signaling pathway after intracerebral hemorrhage.脑出血后,Spi1通过PI3K/AKT/mTOR信号通路调节小胶质细胞/巨噬细胞的炎症反应。
Neural Regen Res. 2024 Jan;19(1):161-170. doi: 10.4103/1673-5374.375343.
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Circadian Rhythms and Astrocytes: The Good, the Bad, and the Ugly.昼夜节律与星形胶质细胞:有好有坏,也有丑陋的一面。
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9
RNA binding protein DDX5 restricts RORγt T suppressor function to promote intestine inflammation.RNA 结合蛋白 DDX5 限制 RORγt T 抑制子功能以促进肠道炎症。
Sci Adv. 2023 Feb 3;9(5):eadd6165. doi: 10.1126/sciadv.add6165. Epub 2023 Feb 1.
10
Homeostatic regulation through strengthening of neuronal network-correlated synaptic inputs.通过增强与神经元网络相关的突触输入进行体内平衡调节。
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