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定制基因检测板在鉴定自闭症谱系障碍相关变异中的临床应用

Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants.

作者信息

Greco Vittoria, Greco Donatella, Treccarichi Simone, Bottitta Maria, Failla Pinella, Musumeci Antonino, Papa Carla, Chiavetta Valeria, Calì Francesco, Vinci Mirella

机构信息

Oasi Research Institute-IRCCS, 94018 Troina, Italy.

出版信息

Medicina (Kaunas). 2025 Jul 14;61(7):1273. doi: 10.3390/medicina61071273.


DOI:10.3390/medicina61071273
PMID:40731902
Abstract

: Autism spectrum disorder (ASD) is a neurodevelopmental disorder that belong to genetic and epigenetic mechanism. Despite the recent advantages in next-generation sequencing (NGS) technology, ASD etiology is still unclear. : In this study, we tested a customized target genetic panel consisting of 74 genes in a cohort of 53 ASD individuals. The tested panel was designed from the SFARI database. : Among 53 patients analyzed using a targeted genetic panel, 102 rare variants were identified, with nine individuals carrying likely pathogenic or pathogenic variants considered genetically "positive." We identified six de novo variants across five genes ( 2 variants, , , , and ), including two variants of uncertain significance in p.Thr451Met and p.Glu1137Lys, one likely pathogenic variant in p.Leu714Gln, and three pathogenic variants in p.Leu775Valfs32, p.Thr1108Metfs8, and p.Pro5Argfs*2. : This study presents a comprehensive characterization of the targeted gene panel used for genetic analysis, while critically evaluating its diagnostic limitations within the context of contemporary genomic approaches. A pivotal accomplishment of this study was the ClinVar submission of novel de novo variants which expands the documented mutational spectrum of ASD-associated genes and enhances future diagnostic interpretation.

摘要

自闭症谱系障碍(ASD)是一种涉及遗传和表观遗传机制的神经发育障碍。尽管下一代测序(NGS)技术最近取得了进展,但ASD的病因仍不清楚。在本研究中,我们在一个由53名ASD个体组成的队列中测试了一个由74个基因组成的定制目标基因panel。该测试panel是根据SFARI数据库设计的。在使用目标基因panel分析的53名患者中,鉴定出102个罕见变异,其中9名个体携带可能致病或致病的变异,被认为在基因上是“阳性结果”。我们在五个基因中鉴定出六个新生变异(2个变异,,,,和),包括p.Thr451Met和p.Glu1137Lys中两个意义不明确的变异、p.Leu714Gln中一个可能致病的变异以及p.Leu775Valfs32、p.Thr1108Metfs8和p.Pro5Argfs*2中三个致病变异。本研究全面描述了用于基因分析的目标基因panel,同时在当代基因组方法的背景下严格评估了其诊断局限性。这项研究的一个关键成果是向ClinVar提交了新的新生变异,这扩展了ASD相关基因的已记录突变谱,并增强了未来的诊断解释。

相似文献

[1]
Clinical Application of a Customized Gene Panel for Identifying Autism Spectrum Disorder-Associated Variants.

Medicina (Kaunas). 2025-7-14

[2]
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[4]
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[6]
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[7]
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[8]
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[9]
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[10]
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本文引用的文献

[1]
Variants of uncertain significance: At the crux of diagnostic odyssey.

Gene. 2025-8-20

[2]
Potential Association of the Gene with Moderate Intellectual Disability, Anxiety Disorder, and Obsessive-Compulsive Personality Traits.

Int J Mol Sci. 2025-5-1

[3]
A heterozygous pathogenic RELN variant in autosomal dominant lateral temporal epilepsy.

Seizure. 2025-7

[4]
Unveiling genetic insights: Array-CGH and WES discoveries in a cohort of 122 children with essential autism spectrum disorder.

BMC Genomics. 2024-12-10

[5]
CUL3-related neurodevelopmental disorder: Clinical phenotype of 20 new individuals and identification of a potential phenotype-associated episignature.

HGG Adv. 2025-1-9

[6]
Loss-of-Function Variants in CUL3 Cause a Syndromic Neurodevelopmental Disorder.

Ann Neurol. 2024-9-20

[7]
Genetic Diagnostic Yield in Autism Spectrum Disorder (ASD) and Epilepsy Phenotypes in Children with Genetically Defined ASD.

J Autism Dev Disord. 2024-8-13

[8]
Autism spectrum disorder prevalence in Italy: a nationwide study promoted by the Ministry of Health.

Child Adolesc Psychiatry Ment Health. 2023-10-28

[9]
Comparative yield of molecular diagnostic algorithms for autism spectrum disorder diagnosis in India: evidence supporting whole exome sequencing as first tier test.

BMC Neurol. 2023-8-5

[10]
Monoallelic and biallelic mutations in RELN underlie a graded series of neurodevelopmental disorders.

Brain. 2022-9-14

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