从活性污泥中分离出的sp. LM3的基因组序列草图。
Draft genome sequence of sp. LM3, isolated from activated sludge.
作者信息
Wu Dan, Kong Lina, Wang Yang, Piao Yongjian, Yuan Yixing, Zhang Fugui, Zhang Lixia, Zhang Shuang
机构信息
Longjiang Environmental Protection Group Co., Ltd, Harbin, China.
School of Environment, Harbin Institute of Technology, Harbin, China.
出版信息
Microbiol Resour Announc. 2025 Sep 11;14(9):e0014025. doi: 10.1128/mra.00140-25. Epub 2025 Jul 31.
Abstract
We report the draft genome of sp. LM3, isolated from the activated sludge of a sewage treatment plant. The draft genome of strain LM3 is 4,376,652 bp, with a GC content of 53.5% and 4,042 protein-coding genes.
摘要
我们报告了从一家污水处理厂的活性污泥中分离出的sp. LM3的基因组草图。菌株LM3的基因组草图为4,376,652碱基对，GC含量为53.5%，有4,042个蛋白质编码基因。
相似文献
1
Draft genome sequence of sp. LM3, isolated from activated sludge.
Microbiol Resour Announc. 2025 Sep 11;14(9):e0014025. doi: 10.1128/mra.00140-25. Epub 2025 Jul 31.
2
Draft genome sequences of rare Lelliottia nimipressuralis strain MEZLN61 and two Enterobacter kobei strains MEZEK193 and MEZEK194 carrying mobile colistin resistance gene mcr-9 isolated from wastewater in South Africa.
J Glob Antimicrob Resist. 2023 Jun;33:231-237. doi: 10.1016/j.jgar.2023.03.007. Epub 2023 Mar 21.
3
Draft genome report of strain MBBL_G6CM1 isolated from milk of a dairy cow with clinical mastitis.
Microbiol Resour Announc. 2025 Jul 10;14(7):e0030225. doi: 10.1128/mra.00302-25. Epub 2025 Jun 12.
4
Draft genome sequence of sp. JC660 isolated from a wastewater treatment plant.
Microbiol Resour Announc. 2025 Jul 10;14(7):e0075424. doi: 10.1128/mra.00754-24. Epub 2025 Jun 18.
5
Draft genome sequence of sp. ARAG 43.8.
Microbiol Resour Announc. 2025 Sep 11;14(9):e0047025. doi: 10.1128/mra.00470-25. Epub 2025 Aug 20.
6
Draft genome sequence of HKEH-1 isolated from a diabetic patient's blood.
Microbiol Resour Announc. 2025 Sep 11;14(9):e0045225. doi: 10.1128/mra.00452-25. Epub 2025 Aug 11.
7
Draft Genome Sequence of sp. AS-1, a Potential Eurytrophic Recombination Host.
J Genomics. 2021 Jan 1;9:6-9. doi: 10.7150/jgen.53040. eCollection 2021.
8
Draft genome sequence of sp. GlSt437 isolated from the Styx Glacier, Antarctica.
Microbiol Resour Announc. 2025 Sep 11;14(9):e0024625. doi: 10.1128/mra.00246-25. Epub 2025 Aug 11.
9
Draft genome sequence and comparative genomic analysis of Halomonas salifodinae strain A2 isolated from the Zapotitlán Salinas Valley, Puebla, Mexico.
Extremophiles. 2025 Jul 3;29(2):28. doi: 10.1007/s00792-025-01397-z.
10
Genome Analysis of Two Pseudomonas syringae pv. Strains with Different Virulence Capacity Isolated from Sugar Beet: Features of Successful Pathogenicity in the Phyllosphere Microbiome.
Microbiol Spectr. 2023 Mar 13;11(2):e0359822. doi: 10.1128/spectrum.03598-22.
本文引用的文献
1
gen. nov., sp. nov., isolated from river sediment represents a novel genus of the family .
Int J Syst Evol Microbiol. 2024 Mar;74(3). doi: 10.1099/ijsem.0.006289.
2
Cold-adaptive mechanism of psychrophilic bacteria in food and its application.
Microb Pathog. 2022 Aug;169:105652. doi: 10.1016/j.micpath.2022.105652. Epub 2022 Jun 23.
3
Evaluation of a novel low-carbon to nitrogen- and temperature-tolerant simultaneously nitrifying-denitrifying bacterium and its use in the treatment of river water.
RSC Adv. 2018 Aug 1;8(48):27417-27422. doi: 10.1039/c8ra04697b. eCollection 2018 Jul 30.
4
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation.
Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
5
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.
Bioinformatics. 2020 Apr 1;36(7):2251-2252. doi: 10.1093/bioinformatics/btz859.
6
tRNAscan-SE: Searching for tRNA Genes in Genomic Sequences.
Methods Mol Biol. 2019;1962:1-14. doi: 10.1007/978-1-4939-9173-0_1.
7
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries.
Nat Commun. 2018 Nov 30;9(1):5114. doi: 10.1038/s41467-018-07641-9.
8
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses.
Nucleic Acids Res. 2019 Jan 8;47(D1):D309-D314. doi: 10.1093/nar/gky1085.
9
Highly efficient nitrogen removal of a coldness-resistant and low nutrient needed bacterium, Janthinobacterium sp. M-11.
Bioresour Technol. 2018 May;256:366-373. doi: 10.1016/j.biortech.2018.02.049. Epub 2018 Feb 13.
10
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics.
Mol Biol Evol. 2018 Mar 1;35(3):543-548. doi: 10.1093/molbev/msx319.
Zotero 插件