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用于生产L-亮氨酸的拜氏不动杆菌ADP1的代谢工程

Metabolic Engineering of Acinetobacter baylyi ADP1 for L-Leucine Production.

作者信息

Yu Wen, Yu Dong, Xiong Min, Liu Yong-Jun, Wang Feng-Qing, Xiong Liang-Bin

机构信息

State Key Laboratory of Bioreactor Engineering, Newworld Institute of Biotechnology, East China University of Science and Technology, Shanghai, China.

Department of General Surgery, Jinshan Central Hospital Affiliated to Shanghai University of Medicine and Health Sciences, Shanghai, China.

出版信息

J Basic Microbiol. 2025 Jul 31:e70075. doi: 10.1002/jobm.70075.

Abstract

Acinetobacter baylyi ADP1 has garnered attention as a promising synthetic biology chassis due to its compact genome, rapid growth, innate competence for horizontal gene transfer, and ease of genetic manipulation. To assess its potential for natural product biosynthesis, we engineered ADP1 for the production of l-leucine. First, feedback inhibition was relieved by overexpressing the endogenous leuA and ilvBN genes, alongside the replacement of transcriptional attenuation regions within the leuBCD operon. These interventions derepressed the native biosynthetic pathway, resulting in a substantial increase in l-leucine titers from 0.10 to 0.82 g/L. Next, we augmented the eda gene in the Entner-Doudoroff pathway, while disrupting poxB, which diverts carbon toward acetate, further promoting l-leucine biosynthesis. To resolve carbon competition between the tricarboxylic acid (TCA) cycle and l-leucine synthesis, an inducible sRNA-based system was developed to dynamically repress TCA cycle-associated genes. This balanced the cell growth with l-leucine anabolism, ultimately achieving a titer of 1.16 g/L with a yield of 0.08 g/g glucose. Interestingly, the l-leucine feedback regulation diverges markedly from classical prokaryotic chassis like Escherichia coli and Corynebacterium glutamicum, in which feedback-resistant variants of leuA and ilvBN are typically required to overcome repression. In contrast, in ADP1, overexpression of the native, wild-type genes was sufficient to drive efficient product synthesis. Moreover, the unique glucose catabolism network in ADP1 limits its pyruvate availability, supplementing pyruvate and minimizing carbon loss proved critical for optimizing l-leucine production. Collectively, our findings offer mechanistic insights into chassis-specific metabolic regulation and optimizing precursor supply in nonmodel organisms.

摘要

拜氏不动杆菌ADP1因其基因组紧凑、生长迅速、具有水平基因转移的天然能力以及易于进行基因操作,作为一种有前景的合成生物学底盘细胞而备受关注。为了评估其在天然产物生物合成方面的潜力,我们对ADP1进行了工程改造以生产L-亮氨酸。首先,通过过表达内源性leuA和ilvBN基因,并替换leuBCD操纵子内的转录衰减区域,解除了反馈抑制。这些干预措施解除了天然生物合成途径的抑制,使L-亮氨酸产量从0.10克/升大幅提高到0.82克/升。接下来,我们增强了Entner-Doudoroff途径中的eda基因,同时破坏了将碳导向乙酸盐的poxB基因,进一步促进L-亮氨酸的生物合成。为了解决三羧酸(TCA)循环与L-亮氨酸合成之间的碳竞争,开发了一种基于诱导型小RNA的系统来动态抑制TCA循环相关基因。这平衡了细胞生长与L-亮氨酸的合成代谢,最终实现了1.16克/升的产量,葡萄糖产率为0.08克/克。有趣的是,L-亮氨酸的反馈调节与大肠杆菌和谷氨酸棒杆菌等经典原核底盘细胞明显不同,在这些细胞中,通常需要leuA和ilvBN的反馈抗性变体来克服抑制作用。相比之下,在ADP1中,天然野生型基因的过表达就足以驱动高效的产物合成。此外,ADP1中独特的葡萄糖分解代谢网络限制了其丙酮酸的可用性,补充丙酮酸并最大限度地减少碳损失对于优化L-亮氨酸生产至关重要。总的来说,我们的研究结果为非模式生物中底盘细胞特异性的代谢调节和优化前体供应提供了机制上的见解。

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