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肿瘤细胞核排出的蛋白质组学分析揭示了细胞外染色质中显著的细胞黏附和RNA结合程序。

Proteomic analysis of tumor cell nuclear expulsion reveals significant cell adhesion and RNA binding programs in extracellular chromatin.

作者信息

Gray Justin M, Park Woo Yong, Holewinski Ronald J, Andresson Thorkell, Carmona-Rivera Carmelo, Kaplan Mariana J, Yang Li

机构信息

Laboratory of Cancer Biology and Genetics, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, 20892, USA.

Department of Biology, Johns Hopkins University, Baltimore, MD, 21218, USA.

出版信息

Sci Rep. 2025 Aug 1;15(1):28054. doi: 10.1038/s41598-025-11807-z.

DOI:10.1038/s41598-025-11807-z
PMID:40751052
Abstract

Understanding mechanisms of cancer cell death and the resulting effect on disease progression is crucial in cancer biology and the insight will likely offer better options for therapeutic treatment. Nuclear expulsion occurs in apoptotic cancer cells in a peptidylarginine deiminase 4 (Padi4) dependent manner. The resulting tumor cell nuclear expulsion product (TuNEP) promotes the outgrowth of neighboring cancer cells through chromatin-bound protein complexes. It is not clear what the protein compositions and functionalities are in these TuNEPs. In this study, we performed extensive proteomic profiling and identified key TuNEP protein components from mouse and human breast cancer cells as well as human lung cancer cells (4T1, MDA-MB-231, and PC9). We further compared TuNEP- specific proteins with those from apoptotic bodies or NETs from neutrophils. We found an enrichment of cellular adhesion molecules as well as increased citrullination of proteins associated with RNA binding. We showed that cellular adhesion molecules integrin and basigin (BSG) promote the growth of tumor spheroids. Our work revealed the unique TuNEP protein components distinct from neutrophil-derived NETs and shed light on potential mechanisms by which these cancer cell-derived TuNEPs promote tumor progression.

摘要

了解癌细胞死亡机制及其对疾病进展的影响在癌症生物学中至关重要,这一见解可能为治疗提供更好的选择。核排出以肽基精氨酸脱亚氨酶4(Padi4)依赖的方式发生在凋亡癌细胞中。由此产生的肿瘤细胞核排出产物(TuNEP)通过染色质结合蛋白复合物促进邻近癌细胞的生长。目前尚不清楚这些TuNEP中的蛋白质组成和功能是什么。在本研究中,我们进行了广泛的蛋白质组学分析,从小鼠和人类乳腺癌细胞以及人类肺癌细胞(4T1、MDA-MB-231和PC9)中鉴定出关键的TuNEP蛋白质成分。我们进一步将TuNEP特异性蛋白质与来自凋亡小体或中性粒细胞的中性粒细胞胞外陷阱(NETs)中的蛋白质进行了比较。我们发现细胞粘附分子富集以及与RNA结合相关的蛋白质瓜氨酸化增加。我们表明细胞粘附分子整合素和基底膜蛋白(BSG)促进肿瘤球体的生长。我们的工作揭示了与中性粒细胞来源的NETs不同的独特TuNEP蛋白质成分,并阐明了这些癌细胞来源的TuNEP促进肿瘤进展的潜在机制。

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本文引用的文献

1
Integrins are enriched on aberrantly fucosylated tumour-derived urinary extracellular vesicles.整合素在异常岩藻糖基化的肿瘤来源的尿液细胞外囊泡中富集。
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Apoptosis-induced nuclear expulsion in tumor cells drives S100a4-mediated metastatic outgrowth through the RAGE pathway.肿瘤细胞凋亡诱导的核排出通过 RAGE 途径驱动 S100a4 介导的转移生长。
Nat Cancer. 2023 Mar;4(3):419-435. doi: 10.1038/s43018-023-00524-z. Epub 2023 Mar 27.
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Correlation of serum citrullinated histone H3 levels with disease activity in patients with rheumatoid arthritis.
血清瓜氨酸化组蛋白 H3 水平与类风湿关节炎患者疾病活动度的相关性。
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The virtues and vices of protein citrullination.蛋白质瓜氨酸化的利弊。
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5
Specificities of exosome versus small ectosome secretion revealed by live intracellular tracking of CD63 and CD9.通过活细胞内追踪 CD63 和 CD9 揭示外泌体与小细胞外囊泡分泌的特异性。
Nat Commun. 2021 Jul 19;12(1):4389. doi: 10.1038/s41467-021-24384-2.
6
Integrin-Ligand Interactions in Inflammation, Cancer, and Metabolic Disease: Insights Into the Multifaceted Roles of an Emerging Ligand Irisin.整合素-配体相互作用在炎症、癌症和代谢性疾病中的作用:对新型配体鸢尾素多方面作用的见解
Front Cell Dev Biol. 2020 Oct 26;8:588066. doi: 10.3389/fcell.2020.588066. eCollection 2020.
7
Extracellular Vesicle Subtypes Released From Activated or Apoptotic T-Lymphocytes Carry a Specific and Stimulus-Dependent Protein Cargo.从活化或凋亡的 T 淋巴细胞释放的细胞外囊泡亚型携带特定的、刺激依赖性的蛋白质货物。
Front Immunol. 2018 Mar 15;9:534. doi: 10.3389/fimmu.2018.00534. eCollection 2018.
8
Secretion of the Phosphorylated Form of S100A9 from Neutrophils Is Essential for the Proinflammatory Functions of Extracellular S100A8/A9.中性粒细胞 S100A9 磷酸化形式的分泌对于细胞外 S100A8/A9 的促炎功能是必不可少的。
Front Immunol. 2018 Mar 13;9:447. doi: 10.3389/fimmu.2018.00447. eCollection 2018.
9
Citrullinated histone H3, a biomarker of neutrophil extracellular trap formation, predicts the risk of venous thromboembolism in cancer patients.瓜氨酸化组蛋白 H3,中性粒细胞胞外诱捕网形成的生物标志物,可预测癌症患者发生静脉血栓栓塞的风险。
J Thromb Haemost. 2018 Mar;16(3):508-518. doi: 10.1111/jth.13951. Epub 2018 Feb 7.
10
Rheumatoid arthritis and citrullination.类风湿关节炎与瓜氨酸化。
Curr Opin Rheumatol. 2018 Jan;30(1):72-78. doi: 10.1097/BOR.0000000000000452.