嘧啶核苷酸碱基中叠氮取代的位点决定了离解电子附着后形成的氮中心自由基的类型。
The Site of Azido Substitution in a Pyrimidine Nucleobase Dictates the Type of Nitrogen-Centered Radical Formed after Dissociative Electron Attachment.
作者信息
Adjei Daniel, de Cabrera Maria, Reyes Yahaira, Barbolovici Alexandru, Alahmadi Moaadh, Ward Samuel, Menet Marie-Claude, Mejanelle Philippe, Kumar Anil, Sevilla Michael D, Wnuk Stanislaw F, Mostafavi Mehran, Adhikary Amitava
机构信息
Institut de Chimie Physique, UMR 8000 CNRS, Bât. 349,Université Paris-Saclay; 91405 Orsay, Cedex, France.
Department of Chemistry and Biochemistry, Florida International University, Miami, Florida 33199, United States.
出版信息
J Phys Chem B. 2025 Aug 14;129(32):8115-8126. doi: 10.1021/acs.jpcb.5c02751. Epub 2025 Aug 4.
Azido(N)-nucleosides are known for their antiviral and anticancer properties. Recently, N-nucleosides have attracted attention for augmenting radiation damage in tumor cells via dissociative electron attachment (DEA) reactions mediated by the simplest and the most potent reducing species (the electron). To investigate the effect of N group substitution at specific sites of the pyrimidine base-ring (C4, C5, and C6) on the DEA reaction, we employed both commercially available and in-house-synthesized N-nucleosides. We conducted a comprehensive study combining electron paramagnetic resonance (EPR) spectroscopy at a low temperature, picosecond pulse radiolysis in an aqueous solution under ambient conditions, and DFT calculations. For N substitution at C4, EPR studies and DFT calculations established a stable azide anion radical (R-N) formation, after the addition of radiation-produced electrons. For N substitution at C5, the DEA leads to a π-type aminyl radical (R-NH) formation. For N substitution at C6, a conjugated iminyl σ-radical (R═N) is formed via DEA. R═N is in equilibrium with R-NH. Thus, this work reports a significant finding: the stabilization and reactivity of each type of nitrogen-centered radical (RN, RNH, R═N) are determined by the position of N substitution on the pyrimidine base-ring.
叠氮(N)-核苷以其抗病毒和抗癌特性而闻名。最近,N-核苷因通过由最简单且最有效的还原物种(电子)介导的离解电子附着(DEA)反应增强肿瘤细胞中的辐射损伤而受到关注。为了研究嘧啶碱基环特定位点(C4、C5和C6)上的N基团取代对DEA反应的影响,我们使用了市售的和内部合成的N-核苷。我们进行了一项综合研究,结合了低温下的电子顺磁共振(EPR)光谱、环境条件下水溶液中的皮秒脉冲辐解以及密度泛函理论(DFT)计算。对于C4位的N取代,EPR研究和DFT计算表明,在添加辐射产生的电子后,形成了稳定的叠氮阴离子自由基(R-N)。对于C5位的N取代,DEA导致形成π型氨基自由基(R-NH)。对于C6位的N取代,通过DEA形成共轭亚胺基σ-自由基(R═N)。R═N与R-NH处于平衡状态。因此,这项工作报告了一个重要发现:每种类型的氮中心自由基(RN、RNH、R═N)的稳定性和反应性由嘧啶碱基环上N取代的位置决定。
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