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一种综合的系统生物学方法确定精氨酸生物合成是白色念珠菌在宿主感染期间的代谢弱点。

An integrated systems biology approach establishes arginine biosynthesis as a metabolic weakness in Candida albicans during host infection.

作者信息

Chakraborty Shuvechha, Palanikumar Indumathi, Gune Yash, Venkatesh K V, Raman Karthik, Idicula-Thomas Susan

机构信息

Biomedical Informatics Centre, ICMR-National Institute for Research in Reproductive and Child Health, Mumbai, Maharashtra, 400012, India.

Department of Biotechnology, Bhupat Jyoti Mehta School of Biosciences, Indian Institute of Technology (IIT) Madras, Chennai, 600036, India.

出版信息

Cell Commun Signal. 2025 Aug 4;23(1):362. doi: 10.1186/s12964-025-02306-9.

DOI:10.1186/s12964-025-02306-9
PMID:40759957
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12320345/
Abstract

Candida albicans, responsible for approximately 70% of all Candida infections, is a leading cause of invasive candidiasis and poses a significant global health threat. With the emergence of drug-resistant strains, mortality rates have reached a staggering 63.6% in severe cases, complicating treatment options and demanding the discovery of novel therapeutic targets. To address this pressing need, using a unique multidisciplinary approach, we attempted to identify some the critical metabolic pathways that can be targeted to modulate the virulence of CAL. Condition-specific genome-scale metabolic models (GSMMs), along with a novel integrated host-CAL model developed in this study, highlighted the central role of arginine (Arg) metabolism and uncovered ALT1, an arginine biosynthesis enzyme, as a critical metabolic vulnerability in CAL virulence. Heightened expression of arginine biosynthesis genes indicated that increased arginine synthesis mainly occurred through proline intermediates during host interaction. Significantly impaired virulence and in vivo pathogenicity of ALT1-deleted CAL highlighted the potential of targeting arginine metabolism as a novel strategy to combat antifungal resistance and underscored the power of integrating systems biology with experimental approaches in identifying new therapeutic targets.

摘要

白色念珠菌约占所有念珠菌感染的70%,是侵袭性念珠菌病的主要病因,对全球健康构成重大威胁。随着耐药菌株的出现,严重病例的死亡率已达到惊人的63.6%,使治疗选择变得复杂,迫切需要发现新的治疗靶点。为满足这一紧迫需求,我们采用独特的多学科方法,试图确定一些可靶向调节白色念珠菌毒力的关键代谢途径。特定条件下的基因组规模代谢模型(GSMMs)以及本研究中开发的新型宿主-白色念珠菌整合模型,突出了精氨酸(Arg)代谢的核心作用,并发现精氨酸生物合成酶ALT1是白色念珠菌毒力的关键代谢弱点。精氨酸生物合成基因的表达增强表明,在宿主相互作用期间,精氨酸合成增加主要通过脯氨酸中间体进行。缺失ALT1的白色念珠菌毒力和体内致病性显著受损,突出了靶向精氨酸代谢作为对抗抗真菌耐药性的新策略的潜力,并强调了将系统生物学与实验方法相结合在识别新治疗靶点方面的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/9c07bece70d5/12964_2025_2306_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/0ffcda2f7664/12964_2025_2306_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/2a342465ddb2/12964_2025_2306_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/6eb6f115b8c9/12964_2025_2306_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/9c07bece70d5/12964_2025_2306_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/0ffcda2f7664/12964_2025_2306_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/2a342465ddb2/12964_2025_2306_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/6eb6f115b8c9/12964_2025_2306_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1955/12320345/9c07bece70d5/12964_2025_2306_Fig4_HTML.jpg

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本文引用的文献

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Attributable mortality of candidemia - Results from the ECMM Candida III multinational European Observational Cohort Study.念珠菌血症的归因死亡率——欧洲临床微生物与感染性疾病学会念珠菌III期多国欧洲观察性队列研究结果
J Infect. 2024 Sep;89(3):106229. doi: 10.1016/j.jinf.2024.106229. Epub 2024 Jul 16.
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A reconstructed genome-scale metabolic model of Helicobacter pylori for predicting putative drug targets in clarithromycin and rifampicin resistance conditions.用于预测克拉霉素和利福平耐药条件下潜在药物靶点的幽门螺杆菌重建基因组规模代谢模型。
Helicobacter. 2024 Mar-Apr;29(2):e13074. doi: 10.1111/hel.13074.
3
Temporal dynamics of morphogenesis and gene expression reveals distinctions between and filamentation.
形态发生和基因表达的时间动态揭示了[具体两种情况未明确]与丝状化之间的差异。
mSphere. 2024 Apr 23;9(4):e0011024. doi: 10.1128/msphere.00110-24. Epub 2024 Mar 19.
4
Global incidence and mortality of severe fungal disease.全球严重真菌感染的发病率和死亡率。
Lancet Infect Dis. 2024 Jul;24(7):e428-e438. doi: 10.1016/S1473-3099(23)00692-8. Epub 2024 Jan 12.
5
PBIT : A robust and comprehensive tool for screening pathogenic proteomes for drug targets and prioritizing vaccine candidates.PBIT:一种强大而全面的工具,用于筛选致病性蛋白质组中的药物靶点,并对疫苗候选物进行优先级排序。
Protein Sci. 2024 Feb;33(2):e4892. doi: 10.1002/pro.4892.
6
Invasive candidiasis: current clinical challenges and unmet needs in adult populations.侵袭性念珠菌病:成人患者的当前临床挑战和未满足的需求。
J Antimicrob Chemother. 2023 Jul 5;78(7):1569-1585. doi: 10.1093/jac/dkad139.
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Computational approaches streamlining drug discovery.计算方法简化药物发现。
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