Raut Rajnikant, Srivastava Devesh, Chakraborty Amit Kumar, Bais Manish V, Mishra Parul, Misra Ashish
Department of Biotechnology, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, India.
Department of Translational Dental Medicine, Boston University Henry M. Goldman School of Dental Medicine, 700 Albany Street, Boston, MA, 02118, USA.
Discov Oncol. 2025 Aug 7;16(1):1495. doi: 10.1007/s12672-025-03069-y.
Castration-resistant prostate cancer (CRPC) poses a major clinical challenge due to its aggressive nature, therapeutic resistance, and frequent progression to bone metastasis. Emerging evidence suggests that E3 ubiquitin ligases play a key role in cancer progression, yet their involvement in CRPC remains poorly understood.
In this study, we employed machine learning (ML) algorithms and integrative bioinformatics approaches to analyze the gene expression profiles of E3 ubiquitin ligases in CRPC patients. Our ML analysis identified FBXO5, TRIM52, PDZRN4, CCNF, TRIM59, and SHPRH as key predictor variables in CRPC. Furthermore, differential expression analysis revealed that FBXO5, TRIM52, CCNF, and PDZRN4 are significantly dysregulated in patient samples exhibiting strong concordance with the ML results. Notably, FBXO5 exhibits robust interactive, survival, and gene expression correlation with BARD1, BRCA1, UHRF1, and SKP2; key regulators of genomic instability and drug resistance in CRPC. Additionally, FBXO5 also exhibits correlative association with CXCR4, a key mediator of prostate cancer bone metastasis. To experimentally validate these in-silico results, we performed functional assays, including cell proliferation, wound healing, and flow cytometry-based cell cycle analysis in FBXO5-knockdown prostate cancer cells. Our results demonstrate that FBXO5 depletion significantly impairs cell proliferation and migration while inducing G1-phase arrest, supporting its oncogenic role in CRPC.
Taken together, our findings establish FBXO5 as a critical mediator of CRPC progression and bone metastatic potential, underscoring its importance as a promising therapeutic target for this aggressive disease.
去势抵抗性前列腺癌(CRPC)因其侵袭性、治疗抵抗性以及频繁进展为骨转移而构成重大临床挑战。新出现的证据表明,E3泛素连接酶在癌症进展中起关键作用,但其在CRPC中的作用仍知之甚少。
在本研究中,我们采用机器学习(ML)算法和整合生物信息学方法分析CRPC患者中E3泛素连接酶的基因表达谱。我们的ML分析确定FBXO5、TRIM52、PDZRN4、CCNF、TRIM59和SHPRH为CRPC中的关键预测变量。此外,差异表达分析显示,FBXO5、TRIM52、CCNF和PDZRN4在患者样本中显著失调,与ML结果高度一致。值得注意的是,FBXO5与BARD1、BRCA1、UHRF1和SKP2表现出强大的相互作用、生存和基因表达相关性;这些是CRPC中基因组不稳定和耐药性的关键调节因子。此外,FBXO5还与CXCR4表现出相关性,CXCR4是前列腺癌骨转移的关键介质。为了通过实验验证这些计算机模拟结果,我们在FBXO5敲低的前列腺癌细胞中进行了功能测定,包括细胞增殖、伤口愈合和基于流式细胞术的细胞周期分析。我们的结果表明,FBXO5的缺失显著损害细胞增殖和迁移,同时诱导G1期停滞,支持其在CRPC中的致癌作用。
综上所述,我们的研究结果确立了FBXO5作为CRPC进展和骨转移潜能的关键介质,强调了其作为这种侵袭性疾病有前景的治疗靶点的重要性。