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RUNX2抑制作用破坏了PAX3::FOXO1-RUNX2前馈环,并瓦解了融合阳性横纹肌肉瘤中的致癌基因程序。

RUNX2 inhibition disrupts a PAX3::FOXO1-RUNX2 feed-forward loop and dismantles oncogenic gene programs in fusion-positive rhabdomyosarcoma.

作者信息

Mendes Elizabeth A, Munshi Aanandi, Singh Archana, Evans Maisie D, Chou Hsien-Chao, Kim Yong Yean, Song Young, Jo Ara, Lee Daniel, Ciampi Jaida, Chambers Audrey, Weitzel Samantha, Deel Michael, Bentley Rex C, Khan Javed, Green Darrell, Linardic Corinne M

机构信息

Division of Pediatric Hematology-Oncology, Department of Pediatrics, Duke University School of Medicine, Durham, NC, USA.

Department of Pharmacology & Cancer Biology, Duke University School of Medicine, Durham, NC, USA.

出版信息

bioRxiv. 2025 Jul 24:2025.07.21.665972. doi: 10.1101/2025.07.21.665972.


DOI:10.1101/2025.07.21.665972
PMID:40777370
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12330556/
Abstract

Fusion-positive rhabdomyosarcoma is an aggressive pediatric cancer of skeletal muscle lineage, with a 5-year overall survival of <30% for high-risk disease, and <8% when metastatic. The fusion gene, resulting from (2:13), is a signature driver of fusion-positive rhabdomyosarcoma, but similar to other transcription-factor based fusion genes in other cancers, not currently pharmacologically tractable. To identify novel druggable proteins in fusion-positive rhabdomyosarcoma tumor tissue and cell lines, we performed mRNA-seq of RMS patient tumors and utilizing the human FP-RMS cell lines Rh30 and Rh4, found that the RUNX2 transcription factor was the top druggable dependency. loss of function studies using genetic (RNAi) or pharmacologic (small molecule CADD522) inhibition showed that RUNX2 suppression inhibited FP-RMS cell growth, induced myogenic differentiation and apoptosis, and phenocopied PAX3::FOXO1 suppression. loss of function studies using conditional (dox-inducible) or pharmacologic (small molecule CADD522) blockade of tumor growth in a xenograft model system showed that RUNX2 suppression inhibited tumor growth. Mechanistically, we identify a PAX3::FOXO1 feed-forward loop whereby PAX3::FOXO1 binds a enhancer to upregulate gene expression alongside MYOD1, while RUNX2 expression supports the expression of PAX3::FOXO1 at the mRNA and protein level.

摘要

融合阳性横纹肌肉瘤是一种侵袭性的源自骨骼肌谱系的儿童癌症,高危疾病的5年总生存率小于30%,发生转移时则小于8%。由(2:13)产生的融合基因是融合阳性横纹肌肉瘤的标志性驱动因素,但与其他癌症中基于转录因子的融合基因类似,目前在药理学上难以处理。为了在融合阳性横纹肌肉瘤肿瘤组织和细胞系中鉴定新的可药物化蛋白,我们对横纹肌肉瘤患者肿瘤进行了mRNA测序,并利用人融合阳性横纹肌肉瘤细胞系Rh30和Rh4,发现RUNX2转录因子是首要的可药物化依赖性因素。使用基因(RNA干扰)或药理学(小分子CADD522)抑制进行的功能丧失研究表明,RUNX2抑制可抑制融合阳性横纹肌肉瘤细胞生长,诱导肌源性分化和凋亡,并模拟PAX3::FOXO1抑制的表型。在异种移植模型系统中使用条件性(多西环素诱导)或药理学(小分子CADD522)阻断肿瘤生长的功能丧失研究表明,RUNX2抑制可抑制肿瘤生长。从机制上讲,我们鉴定出一个PAX3::FOXO1前馈环,其中PAX3::FOXO1结合一个增强子以与MYOD1一起上调基因表达,而RUNX2表达在mRNA和蛋白质水平上支持PAX3::FOXO1的表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/f8b754c256c9/nihpp-2025.07.21.665972v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/29215b55269e/nihpp-2025.07.21.665972v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/8232d2952117/nihpp-2025.07.21.665972v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/7eaebaf7dbea/nihpp-2025.07.21.665972v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/d052e1bb5aef/nihpp-2025.07.21.665972v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/0317bce2df2f/nihpp-2025.07.21.665972v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/909234a858d9/nihpp-2025.07.21.665972v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/f8b754c256c9/nihpp-2025.07.21.665972v1-f0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/29215b55269e/nihpp-2025.07.21.665972v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/8232d2952117/nihpp-2025.07.21.665972v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/7eaebaf7dbea/nihpp-2025.07.21.665972v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/d052e1bb5aef/nihpp-2025.07.21.665972v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/0317bce2df2f/nihpp-2025.07.21.665972v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/909234a858d9/nihpp-2025.07.21.665972v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1c5/12330556/f8b754c256c9/nihpp-2025.07.21.665972v1-f0007.jpg

相似文献

[1]
RUNX2 inhibition disrupts a PAX3::FOXO1-RUNX2 feed-forward loop and dismantles oncogenic gene programs in fusion-positive rhabdomyosarcoma.

bioRxiv. 2025-7-24

[2]
DNA methylation patterns are influenced by Pax3::Foxo1 expression and developmental lineage in rhabdomyosarcoma tumours forming in genetically engineered mouse models.

J Pathol. 2025-3

[3]
Transcriptomic Profiling of Relapsed Rhabdomyosarcoma: Pre- and Post-Treatment Tissue Analysis Reveals Molecular Characteristics of Treatment Failure.

Pediatr Blood Cancer. 2025-9

[4]
Rhabdomyosarcoma fusion oncoprotein initially pioneers a neural signature in vivo.

Cell Rep. 2025-7-22

[5]
HDAC3 genetic and pharmacologic inhibition radiosensitizes fusion positive rhabdomyosarcoma by promoting DNA double-strand breaks.

Cell Death Discov. 2024-8-6

[6]
Prognostic value of PAX3/7-FOXO1 fusion status in alveolar rhabdomyosarcoma: Systematic review and meta-analysis.

Crit Rev Oncol Hematol. 2015-10

[7]
PAX3-FOXO1 drives targetable cell state-dependent metabolic vulnerabilities in rhabdomyosarcoma.

bioRxiv. 2025-1-19

[8]
Rhabdomyosarcoma fusion oncoprotein initially pioneers a neural signature in vivo.

bioRxiv. 2024-7-16

[9]
PAX3-FOXO1 drives miR-486-5p and represses miR-221 contributing to pathogenesis of alveolar rhabdomyosarcoma.

Oncogene. 2018-1-25

[10]
FOXF1 is required for the oncogenic properties of PAX3-FOXO1 in rhabdomyosarcoma.

Oncogene. 2021-3

本文引用的文献

[1]
Targeting metastasis in paediatric bone sarcomas.

Mol Cancer. 2025-5-29

[2]
Targeting the MYCN-MDM2 pathways for cancer therapy: Are they druggable?

Genes Dis. 2023-10-27

[3]
Dependence of PAX3-FOXO1 chromatin occupancy on ETS1 at important disease-promoting genes exposes new targetable vulnerability in Fusion-Positive Rhabdomyosarcoma.

Oncogene. 2025-1

[4]
A Benzarone Derivative Inhibits EYA to Suppress Tumor Growth in SHH Medulloblastoma.

Cancer Res. 2024-3-15

[5]
MYOD-SKP2 axis boosts tumorigenesis in fusion negative rhabdomyosarcoma by preventing differentiation through p57 targeting.

Nat Commun. 2023-12-15

[6]
AMPK-induced novel phosphorylation of RUNX1 inhibits STAT3 activation and overcome imatinib resistance in chronic myelogenous leukemia (CML) subjects.

Cell Death Discov. 2023-10-30

[7]
RUNX2 and Cancer.

Int J Mol Sci. 2023-4-10

[8]
YBX1-interacting small RNAs and can be blocked in primary bone cancer using CADD522.

J Bone Oncol. 2023-3-5

[9]
The RUNX/CBFβ Complex in Breast Cancer: A Conundrum of Context.

Cells. 2023-2-16

[10]
PAX3-FOXO1 coordinates enhancer architecture, eRNA transcription, and RNA polymerase pause release at select gene targets.

Mol Cell. 2022-12-1

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