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恒河猴广泛中和抗体识别HIV-1包膜V2顶端的结构和遗传基础

Structural and genetic basis of HIV-1 envelope V2 apex recognition by rhesus broadly neutralizing antibodies.

作者信息

Roark Ryan S, Habib Rumi, Gorman Jason, Li Hui, Connell Andrew Jesse, Bonsignori Mattia, Guo Yicheng, Hogarty Michael P, Olia Adam S, Sowers Kirsten J, Zhang Baoshan, Bibollet-Ruche Frederic, Bylund Tatsiana, Callaghan Sean, Carey John W, Cerutti Gabriele, Harris Darcy R, He Wanting, Lewis Emily, Liu Tracy, Mason Rosemarie D, Qiao Yujie, Park Younghoon, Rando Juliette M, Singh Ajay, Wolff Jeremy J, Lei Q Paula, Louder Mark K, Andrabi Raiees, Doria-Rose Nicole A, Saunders Kevin O, Seaman Michael S, Haynes Barton F, Kulp Daniel W, Mascola John R, Roederer Mario, Pierson Theodore C, Sheng Zizhang, Hahn Beatrice H, Shaw George M, Kwong Peter D, Shapiro Lawrence

机构信息

Aaron Diamond AIDS Research Center, Columbia University Vagelos College of Physicians and Surgeons , New York, NY, USA.

Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY, USA.

出版信息

J Exp Med. 2025 Oct 6;222(10). doi: 10.1084/jem.20250638. Epub 2025 Aug 18.

Abstract

Broadly neutralizing antibodies targeting the V2 apex of HIV-1 envelope are desired as vaccine design templates, but few have been described. Here, we report 11 lineages of V2 apex-neutralizing antibodies from simian-human immunodeficiency virus (SHIV)-infected rhesus macaques and determine cryo-EM structures for 9. A single V2 apex-neutralizing lineage accounted for cross-clade breadth in most macaques, and somatic hypermutation relative to breadth was generally low, exemplified by antibody V033-a.01 with <5% nucleotide mutation and 37% breadth (208-strain panel). Envelope complex structures revealed eight different antibody classes (one multi-donor) and the complete repertoire of all five possible recognition topologies, recapitulating canonical human modes of apex insertion and C-strand hydrogen bonding. Despite this diversity in recognition, all rhesus-V2 apex antibodies were derived from reading frame two of the DH3-15*01 gene. Collectively, these results define-in rhesus-the structural and genetic basis of HIV-1 V2 apex recognition and demonstrate unprecedented structural plasticity of a highly selected immunogenetic element.

摘要

作为疫苗设计模板,人们期望获得靶向HIV-1包膜V2顶端的广泛中和抗体,但目前报道的此类抗体很少。在此,我们报告了来自感染猿猴免疫缺陷病毒(SHIV)的恒河猴的11个V2顶端中和抗体谱系,并确定了其中9个抗体的冷冻电镜结构。在大多数恒河猴中,单一的V2顶端中和谱系构成了跨分支广度,相对于广度而言,体细胞超突变通常较低,以核苷酸突变率<5%且广度为37%(208株病毒株面板)的抗体V033-a.01为例。包膜复合物结构揭示了八种不同的抗体类别(一种多供体)以及所有五种可能识别拓扑结构的完整组合,概括了典型的人类顶端插入模式和C链氢键。尽管在识别方面存在这种多样性,但所有恒河猴V2顶端抗体均源自DH3-15*01基因的阅读框2。总体而言,这些结果确定了恒河猴中HIV-1 V2顶端识别的结构和遗传基础,并证明了一个高度选择的免疫遗传元件具有前所未有的结构可塑性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0a9/12379892/617ac02d306a/jem_20250638_fig1.jpg

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