Huang Wen-Cong, Spang Anja
Department of Marine Microbiology and Biogeochemistry, NIOZ, Royal Netherlands Institute for Sea Research, 1790 AB Den Burg, The Netherlands; Department of Evolutionary and Population Biology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, 1090 GE Amsterdam, The Netherlands.
Department of Marine Microbiology and Biogeochemistry, NIOZ, Royal Netherlands Institute for Sea Research, 1790 AB Den Burg, The Netherlands; Department of Evolutionary and Population Biology, Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, 1090 GE Amsterdam, The Netherlands.
Curr Biol. 2025 Aug 18;35(16):R791-R794. doi: 10.1016/j.cub.2025.06.038.
Archaea are one of the two primary domains of life alongside Bacteria. Extant archaea play an important role in global nutrient cycles and comprise members that were crucial for the evolution of life on Earth including the origin of eukaryotic cells through a symbiotic integration of an archaeal and bacterial partner. Despite their importance in ecology and evolution, our knowledge of archaeal diversity and function remains limited in part because it has proven challenging to cultivate archaea in the laboratory. Over the last two decades, the use of novel cultivation-independent approaches such as metagenomics has not only led to the discovery of a vast diversity of previously unknown archaeal lineages but also provided a window into their genomic content, allowing researchers to make predictions about metabolic functions and lifestyles. For example, by combining genomics approaches with phylogenetic analyses (that is, the reconstruction of species trees) researchers have uncovered several phylum-level lineages of putative genome-reduced archaea referred to as the 'DPANN' archaea, whose members were shown to have limited metabolic capabilities, indicating their dependency on symbiotic partners. These findings are consistent with observations from cultivation-based studies that have succeeded in enriching some of these small-cell symbionts in co-cultures with their hosts. Although they were initially discovered in extreme environments, DPANN archaea have now been shown to be widespread across a variety of environments and may thus play an important role in not only host evolution but also ecology. Herein, we aim to highlight DPANN archaea by providing an overview of their diversity, genomic and metabolic features, unique cell biology and interactions, and evolutionary origins. We also underscore several fascinating topics that remain underexplored.
古菌是与细菌并列的两个主要生命域之一。现存的古菌在全球营养循环中发挥着重要作用,其成员对地球上生命的进化至关重要,包括通过古菌和细菌伙伴的共生整合形成真核细胞的起源。尽管它们在生态学和进化中具有重要意义,但我们对古菌多样性和功能的了解仍然有限,部分原因是事实证明在实验室中培养古菌具有挑战性。在过去的二十年中,宏基因组学等新型非培养方法的应用不仅导致发现了大量以前未知的古菌谱系,还为了解它们的基因组内容提供了一个窗口,使研究人员能够对代谢功能和生活方式进行预测。例如,通过将基因组学方法与系统发育分析(即物种树的重建)相结合,研究人员发现了几个假定的基因组简化古菌的门级谱系,即“DPANN”古菌,其成员的代谢能力有限,表明它们对共生伙伴的依赖性。这些发现与基于培养的研究结果一致,这些研究成功地在与宿主的共培养中富集了一些这些小细胞共生体。尽管DPANN古菌最初是在极端环境中发现的,但现在已证明它们广泛存在于各种环境中,因此不仅可能在宿主进化中发挥重要作用在生态学中也很重要。在此,我们旨在通过概述DPANN古菌的多样性、基因组和代谢特征、独特的细胞生物学和相互作用以及进化起源来突出它们。我们还强调了几个尚未充分探索的有趣话题。