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针对人偏肺病毒融合蛋白和核蛋白的计算机药物重新利用:迈向大流行防范的一步。

In silico drug repurposing targeting fusion and nucleoprotein of human metapneumovirus: A step toward pandemic preparedness.

作者信息

Rajput Harshita, Choudhary Gajendra, Siddiqui Hadiya, Ghosh Anushka, Prajapat Manisha, Prakash Ajay, Medhi Bikash

机构信息

Department of Biotechnology and Food Technology, Chandigarh University, Mohali, Punjab, India.

Department of Pharmacology, Postgraduate Institute of Medical Education and Research, Chandigarh, India.

出版信息

Indian J Pharmacol. 2025 Sep 1;57(5):308-321. doi: 10.4103/ijp.ijp_559_25. Epub 2025 Aug 22.

Abstract

BACKGROUND

Human metapneumovirus (HMPV) is an emerging respiratory pathogen affecting children, elderly individuals, and immunocompromised patients. Despite its disease burden, no antiviral treatment has been approved to date.

OBJECTIVE

The present study aimed to identify the Food and Drug Administration-approved drugs with potential for repurposing against HMPV by targeting its key structural proteins-fusion (F) and nucleoprotein (N).

MATERIALS AND METHODS

The crystallographic structures of HMPV fusion (Protein Data Bank [PDB] ID: 5WB0) and nucleoprotein (PDB ID: 5FVD) were retrieved, validated, and subjected to molecular docking. Ligands with favorable binding scores were further evaluated using molecular dynamics simulations and binding-free-energy calculations. Pharmacokinetic and toxicity profiles were predicted to assess their translational viability.

RESULTS

For the fusion protein, rutin, carbetocin, and acarbose showed strong binding affinities and stable molecular interactions. For the nucleoprotein, mobocertinib, lapatinib, and levetiracetam emerged as top candidates, with mobocertinib showing the most favorable binding energy. Among all, levetiracetam displayed the most drug-like characteristics, including high gastrointestinal absorption, no major cytochrome P450 inhibition, and no violations of Lipinski's rule.

CONCLUSION

The study highlights mobocertinib, rutin, and levetiracetam as promising repurposed drugs against HMPV. While mobocertinib exhibited the strongest predicted binding affinity, levetiracetam demonstrated the best pharmacokinetic profile, making it a particularly viable candidate for further experimental validation. These results validate the usefulness of in silico drug repurposing in addressing unmet antiviral needs and warrant preclinical studies to evaluate therapeutic efficacy.

摘要

背景

人偏肺病毒(HMPV)是一种新出现的呼吸道病原体,可感染儿童、老年人和免疫功能低下的患者。尽管其疾病负担较重,但迄今为止尚无抗病毒治疗药物获批。

目的

本研究旨在通过靶向人偏肺病毒的关键结构蛋白——融合蛋白(F)和核蛋白(N),确定美国食品药品监督管理局批准的具有重新用于抗HMPV潜力的药物。

材料与方法

检索、验证人偏肺病毒融合蛋白(蛋白质数据银行[PDB]编号:5WB0)和核蛋白(PDB编号:5FVD)的晶体结构,并进行分子对接。使用分子动力学模拟和结合自由能计算进一步评估具有良好结合分数的配体。预测药代动力学和毒性概况以评估其转化可行性。

结果

对于融合蛋白,芦丁、卡贝缩宫素和阿卡波糖表现出很强的结合亲和力和稳定的分子相互作用。对于核蛋白,莫博替尼、拉帕替尼和左乙拉西坦成为首选药物,其中莫博替尼的结合能最有利。其中,左乙拉西坦表现出最像药物的特性,包括高胃肠道吸收率、无主要细胞色素P450抑制作用且未违反Lipinski规则。

结论

该研究突出了莫博替尼、芦丁和左乙拉西坦作为抗HMPV的有前景的重新利用药物。虽然莫博替尼表现出最强的预测结合亲和力,但左乙拉西坦表现出最佳的药代动力学概况,使其成为进一步实验验证的特别可行的候选药物。这些结果证实了计算机辅助药物重新利用在满足未满足的抗病毒需求方面的有用性,并保证进行临床前研究以评估治疗效果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d52a/12419564/d24ef08b4eec/IJPharm-57-308-g001.jpg

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