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从以甲酸盐进行三氯乙烯脱氯培养物中分离得到的新种NIT-TF6。

sp. nov. NIT-TF6 Isolated from Trichloroethene-Dechlorinating Culture with Formate.

作者信息

Bhattacharjee Udaratta, Tomita Ryuya, Xie Li, Yoshida Naoko

机构信息

Department of Civil and Environmental Engineering, Nagoya Institute of Technology (Nitech), Gokiso-Cho, Showa-Ku, Nagoya 466-8555, Japan.

Department of Biotechnology, School of Bio Engineering, SRM-Institute of Science and Technology, Kattankulathur, Chennai 603203, India.

出版信息

Microorganisms. 2025 Aug 9;13(8):1863. doi: 10.3390/microorganisms13081863.

Abstract

A strictly anaerobic bacterium denoted as strain NIT-TF6 of the genus was isolated from a trichloroethene-dechlorinating culture with formate. Cells were straight rods of 1.6-6 µm long and 0.25-0.5 µm in diameter and used H, lactate, pyruvate, and malate as electron donors and thiosulfate and Fe (III)-citrate as electron acceptors. The genome of strain NIT-TF6 was 4.8 Mbp in size and included nine 16S rRNA genes. Phylogenetic analysis based on 16S rRNA sequences showed that NIT-TF6 shared the highest sequence similarity (96.39%) with DCB-2ᵀ, forming an independent clade in the phylogenetic tree. Digital DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) values between strain NIT-TF6 and other species ranged from 15.9 to 16.9% and from 71.68 to 72.51%, respectively. These are well below the thresholds for species delineation. A distinguishing feature of strain NIT-TF6 was its possession of both L-lactate dehydrogenase (L-LDH) and D-lactate dehydrogenase (D-LDH), in contrast to other strains that exclusively express D-LDH. Based on the dDDH and ANI results, combined with physiological, phylogenetic, morphological, biochemical, genomic, and metabolic iron-related characteristics, strain NIT-TF6 has been proposed as a novel species within the genus . The name sp. nov. has been proposed for this strain, with NIT-TF6ᵀ designated as the type strain.

摘要

从以甲酸盐为三氯乙烯脱氯培养物中分离出一种严格厌氧细菌,命名为该属的NIT-TF6菌株。细胞为直杆状,长1.6 - 6 µm,直径0.25 - 0.5 µm,以氢气、乳酸、丙酮酸和苹果酸作为电子供体,硫代硫酸盐和柠檬酸铁(III)作为电子受体。NIT-TF6菌株的基因组大小为4.8 Mbp,包含9个16S rRNA基因。基于16S rRNA序列的系统发育分析表明,NIT-TF6与DCB-2T的序列相似性最高(96.39%),在系统发育树中形成一个独立分支。NIT-TF6菌株与其他该属物种之间的数字DNA-DNA杂交(dDDH)值和平均核苷酸同一性(ANI)值分别在15.9%至16.9%和71.68%至72.51%之间。这些值远低于物种划分的阈值。与其他仅表达D-乳酸脱氢酶的该属菌株相比,NIT-TF6菌株的一个显著特征是它同时拥有L-乳酸脱氢酶(L-LDH)和D-乳酸脱氢酶(D-LDH)。基于dDDH和ANI结果,结合生理、系统发育、形态、生化、基因组和代谢铁相关特征,NIT-TF6菌株被提议作为该属内的一个新物种。已为该菌株提议命名为该属新种,将NIT-TF6T指定为模式菌株。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e6df/12388241/474946e5365d/microorganisms-13-01863-g001.jpg

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