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呼吸道合胞病毒感染期间缺陷病毒基因组的检测、纯化和生产方法。

Methods for the Detection, Purification, and Production of Defective Viral Genomes During Respiratory Syncytial Virus Infection.

作者信息

Brennan Justin W, Sun Yan

机构信息

Department of Microbiology and Immunology, University of Rochester Medical Center, Rochester, NY, USA.

出版信息

Methods Mol Biol. 2025;2948:29-58. doi: 10.1007/978-1-0716-4666-3_3.

DOI:10.1007/978-1-0716-4666-3_3
PMID:40879900
Abstract

Respiratory syncytial virus (RSV) is prone to generating the copy-back type of defective viral genomes (cbDVGs). cbDVGs play crucial roles in RSV pathogenesis by modulating innate immunity and directly interfering with infectious virus replication. Clinically, the timing of cbDVG emergence impacts the severity of RSV infection. DVGs are also considered a novel therapeutic approach for combating viral infections. Therefore, detecting DVGs and comprehensively understanding their functions during RSV infection are paramount. To facilitate these studies, in this chapter, we provide a summary of the commonly used methods for the detection, purification, and production of RSV cbDVGs.

摘要

呼吸道合胞病毒(RSV)易于产生回抄型缺陷病毒基因组(cbDVGs)。cbDVGs通过调节先天免疫和直接干扰传染性病毒复制,在RSV发病机制中发挥关键作用。临床上,cbDVGs出现的时间会影响RSV感染的严重程度。DVGs也被认为是对抗病毒感染的一种新型治疗方法。因此,检测DVGs并全面了解它们在RSV感染过程中的功能至关重要。为了促进这些研究,在本章中,我们总结了检测、纯化和生产RSV cbDVGs的常用方法。

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本文引用的文献

1
Copy-back viral genomes induce a cellular stress response that interferes with viral protein expression without affecting antiviral immunity.回文病毒基因组会引发细胞应激反应,从而干扰病毒蛋白的表达,而不影响抗病毒免疫。
PLoS Biol. 2023 Nov 20;21(11):e3002381. doi: 10.1371/journal.pbio.3002381. eCollection 2023 Nov.
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Identification of a therapeutic interfering particle-A single-dose SARS-CoV-2 antiviral intervention with a high barrier to resistance.鉴定一种治疗性干扰颗粒——一种具有高耐药屏障的单次剂量 SARS-CoV-2 抗病毒干预措施。
Cell. 2021 Dec 9;184(25):6022-6036.e18. doi: 10.1016/j.cell.2021.11.004. Epub 2021 Nov 10.
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Identification and Characterization of Defective Viral Genomes in Ebola Virus-Infected Rhesus Macaques.
鉴定和分析埃博拉病毒感染恒河猴缺陷型病毒基因组。
J Virol. 2021 Aug 10;95(17):e0071421. doi: 10.1128/JVI.00714-21.
4
Defective Interfering Genomes and the Full-Length Viral Genome Trigger RIG-I After Infection With Vesicular Stomatitis Virus in a Replication Dependent Manner.缺陷干扰基因组和全长病毒基因组以复制依赖性方式触发 RIG-I 后感染水疱性口炎病毒。
Front Immunol. 2021 Apr 30;12:595390. doi: 10.3389/fimmu.2021.595390. eCollection 2021.
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Detection of respiratory syncytial virus defective genomes in nasal secretions is associated with distinct clinical outcomes.检测鼻腔分泌物中呼吸道合胞病毒缺陷基因组与不同的临床结局相关。
Nat Microbiol. 2021 May;6(5):672-681. doi: 10.1038/s41564-021-00882-3. Epub 2021 Apr 1.
6
Correction: A specific sequence in the genome of respiratory syncytial virus regulates the generation of copy-back defective viral genomes.更正:呼吸道合胞病毒基因组中的一个特定序列调节回文缺陷病毒基因组的产生。
PLoS Pathog. 2019 Oct 3;15(10):e1008099. doi: 10.1371/journal.ppat.1008099. eCollection 2019 Oct.
7
: defective interfering viral genomes' detector for next-generation sequencing data.缺陷干扰病毒基因组检测下一代测序数据。
RNA. 2018 Oct;24(10):1285-1296. doi: 10.1261/rna.066910.118. Epub 2018 Jul 16.
8
Replication defective viral genomes exploit a cellular pro-survival mechanism to establish paramyxovirus persistence.复制缺陷型病毒基因组利用细胞的促生存机制来建立副粘病毒持续性感染。
Nat Commun. 2017 Oct 6;8(1):799. doi: 10.1038/s41467-017-00909-6.
9
The Respiratory Syncytial Virus Phosphoprotein, Matrix Protein, and Fusion Protein Carboxy-Terminal Domain Drive Efficient Filamentous Virus-Like Particle Formation.呼吸道合胞病毒磷蛋白、基质蛋白和融合蛋白羧基末端结构域驱动高效丝状病毒样颗粒形成。
J Virol. 2016 Nov 14;90(23):10612-10628. doi: 10.1128/JVI.01193-16. Print 2016 Dec 1.
10
Immunostimulatory Defective Viral Genomes from Respiratory Syncytial Virus Promote a Strong Innate Antiviral Response during Infection in Mice and Humans.呼吸道合胞病毒的免疫刺激缺陷病毒基因组在小鼠和人类感染期间促进强烈的先天性抗病毒反应。
PLoS Pathog. 2015 Sep 3;11(9):e1005122. doi: 10.1371/journal.ppat.1005122. eCollection 2015 Sep.