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Pathogenic variation underlying rare diseases in an Arab population: Implications for screening programs.

作者信息

Jain Ruchi, Bizzari Sami, Ramaswamy Sathishkumar, Hasham Khaleem F, Sinha Shruti, Chekroun Ikram, Rabea Fatma, Abuijlan Eman, El Naofal Maha, Hassani Massomeh Sheikh, Shenbagam Shruti, Taylor Alan, Uddin Mohammed, Almarri Mohamed, Alkhnbashi Omer, Khansaheb Hamda, Al Suwaidi Hanan, Du Plessis Stefan S, El-Hayek Stephany, Alsheikh-Ali Alawi, Abou Tayoun Ahmad

机构信息

Dubai Health Genomic Medicine Center, Dubai Health, Dubai, United Arab Emirates.

Centre for Arab Genomic Studies, Hamdan Bin Rashid Al Maktoum Foundation for Medical and Educational Sciences, Dubai, United Arab Emirates.

出版信息

Genet Med Open. 2025 Jul 19;3:103446. doi: 10.1016/j.gimo.2025.103446. eCollection 2025.


DOI:10.1016/j.gimo.2025.103446
PMID:40893834
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12397869/
Abstract

PURPOSE: Genetic variation underlying rare diseases in Arab populations is poorly understood limiting effective carrier screening for recessive disorders, which are prevalent because of high consanguineous rates. METHODS: Using the American College of Medical Genetics and Genomics/Association for Molecular Pathology guidelines, we curated pathogenic (P) and likely pathogenic (LP) variants in 1333 Arab Emirati families (346 internal cohort and 987 from the literature). We also analyzed P/LP variants in 1194 Emirati exomes, calculated allele frequencies, and estimated carrier rates for the associated recessive conditions. RESULTS: Among the 1333 families, 1060 had 701 variants meeting the American College of Medical Genetics and Genomics/Association for Molecular Pathology criteria for pathogenicity, with 52% and 30% being absent from the Genome Aggregation Database and ClinVar databases, respectively. Independently, we determined the frequency of P/LP variants in 1194 Emirati exomes, as well as cumulative gene-disease carrier rates. The gene (HGNC:2600) showed the highest carrier rate (10.6%) followed by (HGNC:4827) (9.6%), (HGNC:6998) (5.9%), and (HGNC:34) (4.3%). Using a provisional gene list for carrier screening, based on our analysis, we estimated an at-risk couples rate of 4% to 21%, which varies across different screening panels recommended in other populations. CONCLUSION: Our findings emphasize the necessity of identifying prevalent diseases in underrepresented populations to develop effective and equitable preventive public health measures, including premarital screening programs.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/afe2af4d0ed2/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/af680bc91b98/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/c4de281045c8/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/63c0f71692c5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/b2c682201578/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/afe2af4d0ed2/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/af680bc91b98/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/c4de281045c8/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/63c0f71692c5/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/b2c682201578/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bd13/12397869/afe2af4d0ed2/gr5.jpg

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Pathogenic variation underlying rare diseases in an Arab population: Implications for screening programs.

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本文引用的文献

[1]
A Dual-Mode Targeted Nanopore Sequencing Assay for Comprehensive SMN1 and SMN2 Variant Analysis.

J Mol Diagn. 2025-6

[2]
Long read sequencing enhances pathogenic and novel variation discovery in patients with rare diseases.

Nat Commun. 2025-3-14

[3]
Founder mutations and rare disease in the Arab world.

Dis Model Mech. 2024-6-1

[4]
Spinal muscular atrophy genetic epidemiology and the case for premarital genomic screening in Arab populations.

Commun Med (Lond). 2024-6-15

[5]
Unequal global implementation of genomic newborn screening.

Nat Rev Genet. 2023-12

[6]
The genomic landscape of rare disorders in the Middle East.

Genome Med. 2023-1-27

[7]
Qatar genome: Insights on genomics from the Middle East.

Hum Mutat. 2022-4

[8]
Utilizing ClinGen gene-disease validity and dosage sensitivity curations to inform variant classification.

Hum Mutat. 2022-8

[9]
Screening for autosomal recessive and X-linked conditions during pregnancy and preconception: a practice resource of the American College of Medical Genetics and Genomics (ACMG).

Genet Med. 2021-10

[10]
Twelve years of SAMtools and BCFtools.

Gigascience. 2021-2-16

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