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纳米孔测序用于肺外结核病快速诊断的诊断准确性:一项系统评价和荟萃分析方案

Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of extrapulmonary tuberculosis: a protocol for a systematic review and meta-analysis.

作者信息

Yu Guocan, Xu Xudong, Shen Yanqin, Ling Yuyang

机构信息

Tuberculosis Diagnosis and Treatment Center of Zhejiang Province, Hangzhou Red Cross Hospital, Hangzhou, Zhejiang, China

Hangzhou Red Cross Hospital, Hangzhou, Zhejiang, China.

出版信息

BMJ Open. 2025 Sep 2;15(9):e103676. doi: 10.1136/bmjopen-2025-103676.

DOI:10.1136/bmjopen-2025-103676
PMID:40897494
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12406828/
Abstract

BACKGROUND

Extrapulmonary tuberculosis (EPTB) is a serious type of tuberculosis (TB) which can cause systemic clinical manifestations. Rapid diagnosis of EPTB for intervention is of great importance. Nanopore sequencing as a third-generation gene sequencing method is a new kind of rapid TB detection. Previous studies have shown that nanopore sequencing has higher diagnostic sensitivity and specificity for TB diagnosis compared with other diagnostic methods. The aim of this research is to develop a systematic review and meta-analysis protocol for assessing the accuracy of nanopore sequencing in diagnosing EPTB.

METHODS AND ANALYSIS

This protocol was conducted in strict adherence to the Preferred Reporting Items for Systematic Reviews and Meta-analysis Protocols guidelines. The study protocol has been prospectively registered with the International Prospective Register of Systematic Reviews under the unique identifier CRD42024608415. We will search Chinese databases and English databases in June 2026. Chinese databases will include Wanfang database, China National Knowledge Infrastructure. English databases will include PubMed, EMBASE and the Cochrane Library. Adhering strictly to the reference standard outlined in this protocol, we will screen the literature. The Quality Assessment of Diagnostic Accuracy Studies will be used by us to assess the methodological quality of the included studies. The statistical tools used are Stata with midas commands and RevMan, and we will perform meta-analysis, generate forest plots and Summary Receiver Operating Characteristic curves. A p value of less than 0.05 will be considered statistically significant. If significant heterogeneity exists and there is a sufficient number of studies, we will investigate its source through subgroup analysis and meta-regression.

ETHICS AND DISSEMINATION

This investigation uses publicly accessible data repositories, exempting it from ethical review board approval requirements. On finalisation of the analysis, findings will be prepared for dissemination through submission to a reputable medical journal employing rigorous peer review processes. The study methodology adheres to established protocols for systematic review and meta-analysis.

PROSPERO REGISTRATION NUMBER

CRD42024608415.

摘要

背景

肺外结核病(EPTB)是一种严重的结核病类型,可引起全身临床表现。快速诊断EPTB以进行干预至关重要。纳米孔测序作为第三代基因测序方法,是一种新型的结核病快速检测方法。先前的研究表明,与其他诊断方法相比,纳米孔测序在结核病诊断中具有更高的诊断敏感性和特异性。本研究的目的是制定一项系统评价和荟萃分析方案,以评估纳米孔测序在诊断EPTB中的准确性。

方法与分析

本方案严格遵循系统评价和荟萃分析方案的首选报告项目指南。该研究方案已在国际前瞻性系统评价注册库中进行前瞻性注册,唯一标识符为CRD42024608415。我们将于2026年6月检索中文数据库和英文数据库。中文数据库将包括万方数据库、中国知网。英文数据库将包括PubMed、EMBASE和Cochrane图书馆。我们将严格按照本方案中概述的参考标准筛选文献。我们将使用诊断准确性研究的质量评估来评估纳入研究的方法学质量。使用的统计工具是带有midas命令的Stata和RevMan,我们将进行荟萃分析,生成森林图和汇总接受者操作特征曲线。p值小于0.05将被视为具有统计学意义。如果存在显著异质性且研究数量充足,我们将通过亚组分析和荟萃回归来探究其来源。

伦理与传播

本调查使用可公开获取的数据存储库,无需伦理审查委员会批准。分析完成后,将通过提交给采用严格同行评审流程的知名医学期刊来准备研究结果以进行传播。该研究方法遵循既定的系统评价和荟萃分析方案。

PROSPERO注册号:CRD42024608415。

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Narra J. 2024 Aug;4(2):e925. doi: 10.52225/narra.v4i2.925. Epub 2024 Aug 13.
2
Targeted nanopore sequencing using clinical specimens for the rapid diagnosis of extrapulmonary tuberculosis.利用临床标本进行靶向纳米孔测序以快速诊断肺外结核病。
BMC Infect Dis. 2024 Jul 19;24(1):710. doi: 10.1186/s12879-024-09618-0.
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Nanopore-based targeted next-generation sequencing of tissue samples for tuberculosis diagnosis.
基于纳米孔的组织样本靶向新一代测序技术用于结核病诊断
Front Microbiol. 2024 Jul 3;15:1403619. doi: 10.3389/fmicb.2024.1403619. eCollection 2024.
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Diagnostic accuracy of nanopore sequencing for the rapid diagnosis of pulmonary tuberculosis: A protocol for a systematic review and meta-analysis.基于纳米孔测序的快速诊断肺结核的诊断准确性:系统评价和荟萃分析方案。
PLoS One. 2024 Jun 6;19(6):e0304162. doi: 10.1371/journal.pone.0304162. eCollection 2024.
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Meta-analysis of diagnostic accuracy of nucleic acid amplification tests for abdominal tuberculosis.核酸扩增检测技术诊断腹部结核的准确性的 Meta 分析。
PLoS One. 2023 Nov 27;18(11):e0289336. doi: 10.1371/journal.pone.0289336. eCollection 2023.
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Nanopore sequencing technology and its applications.纳米孔测序技术及其应用。
MedComm (2020). 2023 Jul 10;4(4):e316. doi: 10.1002/mco2.316. eCollection 2023 Aug.
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Global morbidity and mortality of central nervous system tuberculosis: a systematic review and meta-analysis.全球中枢神经系统结核的发病率和死亡率:系统评价和荟萃分析。
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