地球全基因组计划：数据发布1

The Earth Hologenome Initiative: Data Release 1.

作者信息

Gaun Nanna, Pietroni Carlotta, Martin-Bideguren Garazi, Lauritsen Jonas, Aizpurua Ostaizka, Fernandes Joana M, Ferreira Eduardo, Aubret Fabien, Sarraude Tom, Perry Constant, Wauters Lucas, Romeo Claudia, Spada Martina, Tranquillo Claudia, Sutton Alex O, Griesser Michael, Warrington Miyako H, Pérez I de Lanuza Guillem, Abalos Javier, Aguilar Prem, de la Cruz Ferran, Juste Javier, Alonso-Alonso Pedro, Groombridge Jim, Louch Rebecca, Ruhomaun Kevin, Henshaw Sion, Cabido Carlos, Barrio Ion Garin, Šunje Emina, Hosner Peter, Prates Ivan, While Geoffrey M, García-Roa Roberto, Uller Tobias, Feiner Nathalie, Bonaccorso Elisa, Klein-Ipsen Pernille, Rotovnik Rosalina Molberg, Alberdi Antton, Eisenhofer Raphael

机构信息

Center for Evolutionary Hologenomics, Globe Institute, University of Copenhagen, 1350 Copenhagen, Denmark.

CESAM & Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal.

出版信息

Gigascience. 2025 Jan 6;14. doi: 10.1093/gigascience/giaf102.

DOI:10.1093/gigascience/giaf102

PMID:40910796

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12412122/

Abstract

BACKGROUND

The Earth Hologenome Initiative (EHI) is a global endeavor dedicated to revisit fundamental ecological and evolutionary questions from the systemic host-microbiota perspective, through the standardized generation and analysis of joint animal genomic and associated microbial metagenomic data.

RESULTS

The first data release of the EHI contains 968 shotgun DNA sequencing read files containing 5.2 TB of raw genomic and metagenomic data derived from 21 vertebrate species sampled across 12 countries, as well as 17,666 metagenome-assembled genomes reconstructed from these data.

CONCLUSIONS

The dataset can be used to address fundamental questions about host-microbiota interactions and will be available to the research community under the EHI data usage conditions.

摘要