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用于研究RNA结构与动力学的固态核磁共振方法进展

Advances in solid-state NMR methods for studying RNA structures and dynamics.

作者信息

He Jinhan, Liu Xiaole, Wang Shenlin

机构信息

State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, 200237, China.

出版信息

Magn Reson Lett. 2024 Apr 26;5(1):200133. doi: 10.1016/j.mrl.2024.200133. eCollection 2025 Feb.

Abstract

Ribonucleic acid (RNA) structures and dynamics play a crucial role in elucidating RNA functions and facilitating the design of drugs targeting RNA and RNA-protein complexes. However, obtaining RNA structures using conventional biophysical techniques, such as X-ray crystallography and solution nuclear magnetic resonance (NMR), presents challenges due to the inherent flexibility and susceptibility to degradation of RNA. In recent years, solid-state NMR (SSNMR) has rapidly emerged as a promising alternative technique for characterizing RNA structure and dynamics. SSNMR has several distinct advantages, including flexibility in sample states, the ability to capture dynamic features of RNA in solid form, and suitability to character RNAs in various sizes. Recent decade witnessed the growth of H-detected SSNMR methods on RNA, which targeted elucidating RNA topology and base pair dynamics in solid state. They have been applied to determine the topology of RNA segment in human immunodeficiency virus (HIV) genome and the base pair dynamics of riboswitch RNA. These advancements have expanded the utility of SSNMR techniques within the RNA research field. This review provides a comprehensive discussion of recent progress in H-detected SSNMR investigations into RNA structure and dynamics. We focus on the established H-detected SSNMR methods, sample preparation protocols, and the implementation of rapid data acquisition approaches.

摘要

核糖核酸(RNA)的结构和动力学在阐明RNA功能以及推动针对RNA和RNA-蛋白质复合物的药物设计方面发挥着关键作用。然而,使用传统生物物理技术(如X射线晶体学和溶液核磁共振(NMR))来获取RNA结构面临挑战,因为RNA具有固有的灵活性且易降解。近年来,固态核磁共振(SSNMR)迅速成为一种用于表征RNA结构和动力学的有前景的替代技术。SSNMR具有几个显著优势,包括样品状态的灵活性、以固态形式捕获RNA动态特征的能力以及适用于表征各种大小的RNA。近十年来,针对RNA的氢检测固态核磁共振方法不断发展,旨在阐明固态RNA的拓扑结构和碱基对动力学。它们已被应用于确定人类免疫缺陷病毒(HIV)基因组中RNA片段的拓扑结构以及核糖开关RNA的碱基对动力学。这些进展扩展了SSNMR技术在RNA研究领域的应用。本综述全面讨论了氢检测固态核磁共振在研究RNA结构和动力学方面的最新进展。我们重点关注已确立的氢检测固态核磁共振方法、样品制备方案以及快速数据采集方法的实施。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc3d/12406530/c1e632a1b8c9/ga1.jpg

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