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骨质疏松症发病机制中内质网应激相关基因的鉴定

Identification of Endoplasmic Reticulum Stress-Related Genes in Osteoporosis Pathogenesis.

作者信息

Zhu Yiren, Yang Xiu, Lu Yunan, He Jiayu, Liu Bo, Zhang Yongfa, Zhang Zhengchao

机构信息

Shengli Clinical Medical College of Fujian Medical University, Fuzhou 350001, Fujian, China.

Fuzong Clinical Medical College of Fujian Medical University, Fuzhou 350001, Fujian, China.

出版信息

Mediators Inflamm. 2025 Aug 30;2025:6726771. doi: 10.1155/mi/6726771. eCollection 2025.

Abstract

Osteoporosis is a prevalent metabolic bone disorder with complex molecular underpinnings. Emerging evidence implicates endoplasmic reticulum stress (ERS) in its pathogenesis; however, systematic exploration of ERS-related genes (ERSRGs) remains limited. This study aimed to identify ERS-related differentially expressed genes (ERSRDEGs) in osteoporosis, construct a diagnostic model, and elucidate associated molecular mechanisms. Three osteoporosis datasets (GSE56815, GSE230665, and GSE7429) were integrated after batch effect correction and normalization. ERSRGs were curated from GeneCards, and ERSRDEGs were identified by intersecting co-differentially expressed genes (Co-DEGs) across datasets. Functional enrichment (gene set enrichment analysis [GSEA], gene set variation analysis [GSVA], Gene Ontology [GO], and Kyoto Encyclopedia of Genes and Genomes [KEGG]) and immune infiltration analyses were performed. Diagnostic models were developed using support vector machine (SVM) and least absolute shrinkage and selection operator (LASSO) regression, validated via receiver operating characteristic (ROC) curves, nomograms, and decision curve analysis. Experimental validation included immunohistochemistry and quantitative reverse transcription polymerase chain reaction (qRT-PCR) in ovariectomized (OVX) mice. Regulatory networks (TF-miRNA-RBP-drug) and protein structure predictions were generated using bioinformatic tools. Fifty six ERSRDEGs were identified, enriched in apoptosis, autophagy, and cytokine signaling pathways. A diagnostic model comprising seven genes (CYB5R4, RAB1B, UFSP2, RNF13, SERP1, CES2, and C1QBP) demonstrated high accuracy (area under the curve (AUC) > 0.9) in both training and validation datasets. Immune infiltration analysis revealed distinct patterns of activated B cells, CD8 T cells, and macrophages between high- and low-risk groups. Regulatory networks highlighted interactions with 52 transcription factors (TFs), 42 miRNAs, and 27 therapeutic compounds. Experimental validation in OVX mice confirmed upregulated expression of C1QBP, CYB5R4, RAB1B, and UFSP2 at protein/mRNA levels, aligning with bioinformatic predictions. This study establishes ERSRDEGs as critical players in osteoporosis pathogenesis and provides a clinically translatable seven-gene diagnostic model for early osteoporosis detection. The integration of multiomics analyses uncovered key pathways, immune dynamics, and regulatory networks, while experimental validation reinforced the role of specific ERSRGs. These findings provide novel insights into ERS-mediated mechanisms and therapeutic targets for osteoporosis management.

摘要

骨质疏松症是一种普遍存在的代谢性骨病,其分子基础复杂。新出现的证据表明内质网应激(ERS)参与了其发病机制;然而,对ERS相关基因(ERSRGs)的系统探索仍然有限。本研究旨在识别骨质疏松症中与ERS相关的差异表达基因(ERSRDEGs),构建诊断模型,并阐明相关的分子机制。在进行批次效应校正和标准化后,整合了三个骨质疏松症数据集(GSE56815、GSE230665和GSE7429)。从GeneCards中筛选出ERSRGs,并通过交叉分析各数据集中的共差异表达基因(Co-DEGs)来识别ERSRDEGs。进行了功能富集分析(基因集富集分析[GSEA]、基因集变异分析[GSVA]、基因本体[GO]和京都基因与基因组百科全书[KEGG])以及免疫浸润分析。使用支持向量机(SVM)和最小绝对收缩和选择算子(LASSO)回归开发诊断模型,并通过受试者工作特征(ROC)曲线、列线图和决策曲线分析进行验证。实验验证包括在去卵巢(OVX)小鼠中进行免疫组织化学和定量逆转录聚合酶链反应(qRT-PCR)。使用生物信息学工具生成调控网络(TF-miRNA-RBP-药物)和蛋白质结构预测。共识别出56个ERSRDEGs,它们在细胞凋亡、自噬和细胞因子信号通路中富集。一个由七个基因(CYB5R4、RAB1B、UFSP2、RNF13、SERP1、CES2和C1QBP)组成的诊断模型在训练集和验证集中均显示出高准确性(曲线下面积[AUC]>0.9)。免疫浸润分析揭示了高风险组和低风险组之间活化B细胞、CD8 T细胞和巨噬细胞的不同模式。调控网络突出了与52个转录因子(TFs)、42个miRNA和27种治疗性化合物的相互作用。在OVX小鼠中的实验验证证实了C

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c848/12413945/a3f6c9ee19de/MI2025-6726771.001.jpg

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