Sharma Diksha, Stoos Lisa, Torgrimson Megan R, Crosby Priya, Franks Kyle M, Parsley Nicole C, Membreno Miles, Kempf Georg, Kater Lukas, Gustafson Chelsea L, Lee Hsiau-Wei, Rubin Seth M, Michael Alicia K, Thomä Nicolas H, Partch Carrie L
Department of Chemistry and Biochemistry, University of California Santa Cruz, Santa Cruz, CA USA.
Friedrich Miescher Institute for Biomedical Research, Basel, Switzerland.
bioRxiv. 2025 Sep 7:2025.09.04.674342. doi: 10.1101/2025.09.04.674342.
The basic helix-loop-helix PER-ARNT-SIM (bHLH-PAS) transcription factor CLOCK:BMAL1 interacts with E-box motifs in the context of nucleosomes to elicit a circadian pattern of gene expression that oscillates with approximately 24 hour periodicity. Core clock genes and other highly rhythmic targets of CLOCK:BMAL1 typically possess a tandem arrangement of E-boxes that is required for robust oscillations. Here, we show that the presence of tandem E-boxes enables CLOCK:BMAL1 to bind more internal sites on the nucleosome, leading to release of DNA from the histone core and the presentation of multiple coactivator binding motifs in close proximity to facilitate multivalent interactions with the coactivator CBP/p300. We show that the transactivation domain (TAD) of BMAL1, essential for CLOCK:BMAL1 activity, interacts with several modular domains of CBP. Deletion of these CBP domains or chemical inhibition of protein-protein interactions with CBP significantly reduces or eliminates CLOCK:BMAL1-driven activity. Altogether, this suggests that multivalent interactions with CBP may play a role in the ability of tandem CLOCK:BMAL1 heterodimers to recruit this limiting cofactor in cells.
基本螺旋-环-螺旋PER-ARNT-SIM(bHLH-PAS)转录因子CLOCK:BMAL1在核小体环境中与E-box基序相互作用,引发具有约24小时周期性振荡的昼夜节律基因表达模式。核心生物钟基因以及CLOCK:BMAL1的其他高节律性靶标通常具有串联排列的E-boxes,这是强劲振荡所必需的。在这里,我们表明串联E-boxes的存在使CLOCK:BMAL1能够结合核小体上更多的内部位点,导致DNA从组蛋白核心释放,并在紧邻位置呈现多个共激活因子结合基序,以促进与共激活因子CBP/p300的多价相互作用。我们表明,BMAL1的反式激活结构域(TAD)对CLOCK:BMAL1活性至关重要,它与CBP的几个模块化结构域相互作用。缺失这些CBP结构域或化学抑制与CBP的蛋白质-蛋白质相互作用会显著降低或消除CLOCK:BMAL1驱动的活性。总之,这表明与CBP的多价相互作用可能在串联CLOCK:BMAL1异二聚体在细胞中招募这种有限共因子的能力中发挥作用。