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基于肽的药物作为脊柱动脉粥样硬化多靶点治疗:一项计算机模拟研究。

Peptide-based drug as atherosclerosis multitarget therapy from spine: An in silico study.

作者信息

Arisanty Dessy, Khairani Salsabila P, Cuandra Kevin N, Wahyudi Dhyani P, Kamila Isna C, Maharani Malya Cs, Theodora Eillen, Budianto Raymond E, Shofiy Alifya R, Nugraha Ikwandi C, Aaliyya Zaki S, Rahman Awalil Rk, Ariouso Al H

机构信息

Department of Biochemistry, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.

Department of Biomedical Science, Faculty of Medicine, Universitas Andalas, Padang, Indonesia.

出版信息

Narra J. 2025 Aug;5(2):e1152. doi: 10.52225/narra.v5i2.1152. Epub 2025 Apr 21.

DOI:10.52225/narra.v5i2.1152
PMID:40951501
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12425505/
Abstract

Atherosclerosis is a leading cardiovascular disease characterized by the buildup of plaques within arterial walls. The aim of this study was to investigate the potential of peptides derived from spines as novel therapeutic agents for atherosclerosis using an in silico approach. Key proteins involved in atherosclerosis were selected as target proteins: vascular endothelial growth factor receptor (VEGFR), protein kinase B (AKT1), epidermal growth factor receptor (EGFR), mitogen-activated protein kinase 8 (MAPK8), and endothelin-1 (ET-1). Comprehensive analysis involving ligand and protein preparation, toxicity, and allergenicity assessments, absorption, distribution, metabolism and excretion (ADME) predictions, and molecular docking were conducted to evaluate the safety, pharmacokinetic properties, binding affinity (kcal/mol), root mean square deviation (RMSD) (Å), as well as a 2D and 3D visualization. Toxicity predictions revealed that peptide 9 was non-toxic and non-allergenic, with a lethal dose 50 (LD) of 3,000 mg/kg, indicating its safety. Peptide 9 demonstrated the most promising results, effectively inhibiting VEGFR2 (-10,90 kcal/mol), AKT1 (-10,56 kcal/mol), EGFR (-9,82 kcal/mol), MAPK8 (-9,64 kcal/mol), and ET-1 (-11,41 kcal/mol) with strong binding affinities and specificity. These interactions suggested that peptide 9 from spines may serve as a competitive multitarget inhibitor, offering potential multitarget therapeutic activity against atherosclerosis. Peptide 9 also had high water solubility and did not affect the concentration or excretion of other drugs or compounds, minimizing the risk of drug-drug interactions.

摘要

动脉粥样硬化是一种主要的心血管疾病,其特征是动脉壁内斑块的积累。本研究的目的是使用计算机模拟方法研究源自刺的肽作为动脉粥样硬化新型治疗剂的潜力。选择参与动脉粥样硬化的关键蛋白作为靶蛋白:血管内皮生长因子受体(VEGFR)、蛋白激酶B(AKT1)、表皮生长因子受体(EGFR)、丝裂原活化蛋白激酶8(MAPK8)和内皮素-1(ET-1)。进行了包括配体和蛋白质制备、毒性和致敏性评估、吸收、分布、代谢和排泄(ADME)预测以及分子对接的综合分析,以评估安全性、药代动力学性质、结合亲和力(千卡/摩尔)、均方根偏差(RMSD)(埃)以及二维和三维可视化。毒性预测表明,肽9无毒且无致敏性,半数致死剂量(LD)为3000毫克/千克,表明其安全性。肽9显示出最有前景的结果,以强结合亲和力和特异性有效抑制VEGFR2(-10.90千卡/摩尔)、AKT1(-10.56千卡/摩尔)、EGFR(-9.82千卡/摩尔)、MAPK8(-9.64千卡/摩尔)和ET-1(-11.41千卡/摩尔)。这些相互作用表明,来自刺的肽9可能作为竞争性多靶点抑制剂,提供针对动脉粥样硬化的潜在多靶点治疗活性。肽9还具有高水溶性,不影响其他药物或化合物的浓度或排泄,将药物相互作用的风险降至最低。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/c504449a14b6/NarraJ-5-e1152-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/bff772e092c8/NarraJ-5-e1152-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/1f0ae940a2ab/NarraJ-5-e1152-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/f516efd68af8/NarraJ-5-e1152-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/53a80e69f093/NarraJ-5-e1152-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/671645840d74/NarraJ-5-e1152-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/c504449a14b6/NarraJ-5-e1152-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/bff772e092c8/NarraJ-5-e1152-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/1f0ae940a2ab/NarraJ-5-e1152-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/f516efd68af8/NarraJ-5-e1152-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/53a80e69f093/NarraJ-5-e1152-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/671645840d74/NarraJ-5-e1152-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4080/12425505/c504449a14b6/NarraJ-5-e1152-g006.jpg

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