Kalita Surajit, Danovich David, Shaik Sason
Institute of Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 9190401, Israel.
J Am Chem Soc. 2025 Oct 1;147(39):35576-35586. doi: 10.1021/jacs.5c10488. Epub 2025 Sep 17.
Cytochrome P450 enzymes (P450s) and their functionally analogous TauD enzyme (taurine D α-KG-dependent dioxygenase) oxidize alkanes by an initial hydrogen atom abstraction. We use molecular dynamics (MD) simulations and hybrid quantum mechanics/molecular-mechanics (QM/MM) calculations to comprehend the origins of the (KIEs), which are exhibited by these two enzyme families. Thus, P450s exhibit low KIE values, which indicate the absence of quantum mechanical tunneling (QMT) contributions, whereas TauD exhibits high KIEs, which apparently include QMT. Furthermore, the calculations show that the P450 protein-folds compensate for the lack of QMT, by reactivity enhancement due to the favorable interactions of the substrate(s) with the corresponding local electric field (LEF) of these enzymes. By contrast, TauD exhibits higher hydrogen abstraction barriers as well as a significant QMT. Thus, the relative reactivities of the two enzyme-types, toward a given substrate, are determined by the larger LEF in P450s vis-à-vis the higher QMT in TauD. The present manuscript provides a comprehensive understanding of the root-causes of the LEF effects of the protein-folds vs the QMT factors, in modulating hydrogen-atom abstraction reactivity, in two distinct mechanistic strategies, for the functionally analogous P450 and TauD enzymes.
细胞色素P450酶(P450s)及其功能类似的TauD酶(牛磺酸Dα-酮戊二酸依赖性双加氧酶)通过最初的氢原子提取来氧化烷烃。我们使用分子动力学(MD)模拟和量子力学/分子力学混合(QM/MM)计算来理解这两个酶家族所表现出的动力学同位素效应(KIEs)的起源。因此,P450s表现出较低的KIE值,这表明不存在量子力学隧穿(QMT)贡献,而TauD表现出较高的KIEs,这显然包括QMT。此外,计算表明,P450蛋白折叠通过底物与这些酶相应局部电场(LEF)的有利相互作用增强反应性,从而弥补了QMT的不足。相比之下,TauD表现出更高的氢提取势垒以及显著的QMT。因此,对于给定底物,这两种酶类型的相对反应性取决于P450s中较大的LEF与TauD中较高的QMT。本手稿全面理解了在功能类似的P450和TauD酶的两种不同机制策略中,蛋白折叠的LEF效应与QMT因素在调节氢原子提取反应性方面的根本原因。