Fakhar Muhammad, Gul Mehreen, Li Wenjin
College of Civil and Transportation Engineering, Shenzhen University, Shenzhen 518060, China.
Institute for Advanced Study, Shenzhen University, Shenzhen 518060, China.
Biomolecules. 2025 Aug 29;15(9):1255. doi: 10.3390/biom15091255.
Asthma is a chronic inflammatory airway disease influenced by both genetic and environmental factors. Recent insights have underscored the pivotal role of epigenetic regulation in the pathogenesis and heterogeneity of asthma. This review focuses on key epigenetically important regulators categorized as writers, erasers, and readers that govern DNA methylation, histone modifications, and RNA modifications. These proteins modulate gene expression without altering the underlying DNA sequence, thereby influencing immune responses, airway remodeling, and disease severity. We highlight the structural and functional dynamics of histone acetyltransferases (e.g., p300/CBP), histone deacetylases (e.g., SIRT family), DNA methyltransferases (DNMT1, DNMT3A), demethylases (TET1), and methyl-CpG-binding proteins (MBD2) in shaping chromatin accessibility and transcriptional activity. Additionally, the m6A RNA modification machinery including METTL3, METTL14, FTO, YTHDF1/2, IGF2BP2, and WTAP is explored for its emerging significance in regulating post-transcriptional gene expression during asthma progression. Structural characterizations of these proteins reveal conserved catalytic domains and interaction motifs, mirroring their respective families such as SIRTs, p300/CBP, DNMT1/3A, and YTHDF1/2 critical to their epigenetic functions, offering mechanistic insight into their roles in airway inflammation and immune modulation. By elucidating these pathways, this review provides a framework for the development of epigenetic biomarkers and targeted therapies. Future directions emphasize phenotype-specific epigenomic profiling and structure-guided drug design to enable precision medicine approaches in asthma management.
哮喘是一种受遗传和环境因素影响的慢性炎症性气道疾病。最近的研究表明,表观遗传调控在哮喘的发病机制和异质性中起着关键作用。本综述重点关注表观遗传方面的关键调节因子,这些因子可分为调控DNA甲基化、组蛋白修饰和RNA修饰的“书写者”“擦除者”和“阅读者”。这些蛋白质在不改变基础DNA序列的情况下调节基因表达,从而影响免疫反应、气道重塑和疾病严重程度。我们强调组蛋白乙酰转移酶(如p300/CBP)、组蛋白去乙酰化酶(如SIRT家族)、DNA甲基转移酶(DNMT1、DNMT3A)、去甲基化酶(TET1)和甲基CpG结合蛋白(MBD2)在塑造染色质可及性和转录活性方面的结构和功能动态。此外,还探讨了包括METTL3、METTL14、FTO、YTHDF1/2、IGF2BP2和WTAP在内的m6A RNA修饰机制在哮喘进展过程中调节转录后基因表达的新意义。这些蛋白质的结构特征揭示了保守的催化结构域和相互作用基序,反映了它们各自的家族,如对其表观遗传功能至关重要的SIRTs、p300/CBP、DNMT1/3A和YTHDF1/2,为深入了解它们在气道炎症和免疫调节中的作用提供了机制。通过阐明这些途径,本综述为表观遗传生物标志物的开发和靶向治疗提供了一个框架。未来的方向强调针对特定表型的表观基因组分析和结构导向的药物设计,以实现哮喘管理中的精准医学方法。