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低温生长期间黑色素生物合成的转录组和代谢组综合评估

Integrative transcriptome and metabolome evaluation of melanin biosynthesis in during low-temperature growth.

作者信息

Wang Haojie, Cao Yadan, Mansfield Shawn D, Zhang Pengwei, Lin Xinchun, Hou Dan

机构信息

National Key Laboratory for Development and Utilization of Forest Food Resources, Zhejiang A&F University, Hangzhou 311300, China.

Key Laboratory of Bamboo Science and Technology of Ministry of Education, Bamboo Industry Institute, Zhejiang A&F University, Hangzhou 311300, China.

出版信息

For Res (Fayettev). 2025 Sep 23;5:e020. doi: 10.48130/forres-0025-0020. eCollection 2025.

DOI:10.48130/forres-0025-0020
PMID:41019230
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12464485/
Abstract

Plant melanin is an organic molecule commonly used in medicine, food, and chemical industries. However, the molecular underpinnings of plant melanin's biosynthesis and its regulation are still unclear. is well known for its ornamental value because of its black culms. The black pigments enriched in the epidermis and cortex of were identified to be melanin by analyses of its physical and chemical properties. Moreover, the biosynthesis of melanin was examined using comprehensive transcriptomic and metabolomic analyses in when grown at low temperatures. Nontargeted metabolite profiling revealed that some indoles, including serotonin, 3-indoleacetic acid, and 1H-indole-3-acetamide, were significantly enriched in when grown at low temperatures. Parallel transcriptomic analysis showed that a set of structural genes involved in serotonin biosynthesis was significantly upregulated by low temperatures. By integrating the transcriptome data and weighted gene co-expression network analysis, the essential transcription factors that putatively regulate the biosynthesis of serotonins were revealed. Among those, PnWRKY19-3 was functionally tested and shown to increase the serotonin content in transgenic rice by upregulating under low temperature conditions. These findings suggest that PnWRKY19-3 may play a positive role in promoting melanin formation in the culms of . According to the two functional genomic platforms, it appears that low temperature stimulates melanin formation in by inducing the biosynthesis of indoles. Our research provides new insights into melanin biosynthesis in bamboo, which may be vital to other plant species.

摘要

植物黑色素是一种常用于医药、食品和化工行业的有机分子。然而,植物黑色素生物合成及其调控的分子基础仍不清楚。因其黑色茎秆而具有观赏价值。通过对其理化性质的分析,确定富集在其表皮和皮层中的黑色色素为黑色素。此外,利用综合转录组学和代谢组学分析方法,研究了在低温下生长时黑色素的生物合成。非靶向代谢物谱分析表明,一些吲哚,包括血清素、3-吲哚乙酸和1H-吲哚-3-乙酰胺,在低温下生长时在中显著富集。平行转录组分析表明,一组参与血清素生物合成的结构基因在低温下显著上调。通过整合转录组数据和加权基因共表达网络分析,揭示了可能调控血清素生物合成的关键转录因子。其中,对PnWRKY19-3进行了功能测试,结果表明在低温条件下,它通过上调转基因水稻中的血清素含量。这些发现表明,PnWRKY19-3可能在促进茎秆中黑色素形成方面发挥积极作用。根据这两个功能基因组平台,低温似乎通过诱导吲哚的生物合成来刺激黑色素的形成。我们的研究为竹子黑色素生物合成提供了新的见解,这可能对其他植物物种至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/a32e4d2f21d9/forres-0025-0020-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/21841847256c/forres-0025-0020-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/e39d56562a9d/forres-0025-0020-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/2e6d25a4c335/forres-0025-0020-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/d114b410da3f/forres-0025-0020-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/977b75b6ab14/forres-0025-0020-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/4b9aa2552842/forres-0025-0020-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/a32e4d2f21d9/forres-0025-0020-7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/21841847256c/forres-0025-0020-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/e39d56562a9d/forres-0025-0020-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/2e6d25a4c335/forres-0025-0020-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/d114b410da3f/forres-0025-0020-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/977b75b6ab14/forres-0025-0020-5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/4b9aa2552842/forres-0025-0020-6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8481/12464485/a32e4d2f21d9/forres-0025-0020-7.jpg

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本文引用的文献

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WRKYs as regulatory hubs of secondary metabolic networks: Diverse inducers and distinct responses.WRKY作为次生代谢网络的调控枢纽:多样的诱导物与不同的响应
Plant Commun. 2025 Sep 8;6(9):101438. doi: 10.1016/j.xplc.2025.101438. Epub 2025 Jul 12.
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Volatilome-based GWAS identifies OsWRKY19 and OsNAC021 as key regulators of rice aroma.基于挥发物组的全基因组关联研究确定OsWRKY19和OsNAC021为水稻香气的关键调控因子。
Mol Plant. 2024 Dec 2;17(12):1866-1882. doi: 10.1016/j.molp.2024.11.002. Epub 2024 Nov 12.
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KEGG: biological systems database as a model of the real world.
京都基因与基因组百科全书(KEGG):作为现实世界模型的生物系统数据库。
Nucleic Acids Res. 2025 Jan 6;53(D1):D672-D677. doi: 10.1093/nar/gkae909.
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Heat-induced modulation of flavonoid biosynthesis via a LhMYBC2-Mediated regulatory network in oriental hybrid lily.热胁迫通过 LhMYBC2 介导的调控网络对东方百合花色苷生物合成的调控
Plant Physiol Biochem. 2024 Sep;214:108966. doi: 10.1016/j.plaphy.2024.108966. Epub 2024 Jul 23.
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Integrated Transcriptome and Metabolome Analyses Reveal Bamboo Culm Color Formation Mechanisms Involved in Anthocyanin Biosynthetic in .整合转录组和代谢组分析揭示. 中参与花色苷生物合成的竹秆颜色形成机制
Int J Mol Sci. 2024 Feb 1;25(3):1738. doi: 10.3390/ijms25031738.
6
Melanin: insights into structure, analysis, and biological activities for future development.黑色素:结构、分析和生物活性的深入了解,为未来的发展提供思路。
J Mater Chem B. 2023 Sep 6;11(32):7528-7543. doi: 10.1039/d3tb01132a.
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Serotonin: A frontline player in plant growth and stress responses.血清素:植物生长和应激反应中的一线参与者。
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Low temperature-induced regulatory network rewiring via WRKY regulators during banana peel browning.低温通过 WRKY 调控因子诱导香蕉皮褐变过程中的调控网络重排。
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