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测量底物:催化过程中活性中心拓扑结构的能量转移测量工具。

Surveyor substrates: energy-transfer gauges of active center topography during catalysis.

作者信息

Latt S A, Auld D S, Valee B L

出版信息

Proc Natl Acad Sci U S A. 1970 Nov;67(3):1383-9. doi: 10.1073/pnas.67.3.1383.

DOI:10.1073/pnas.67.3.1383
PMID:5274465
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC283363/
Abstract

An approach is described for the simultaneous measurement of catalysis, the distance from an active-site moiety to fluorescent substrate moieties of an enzyme substrate complex, and the microenvironment of such substrate groups. It is illustrated by means of a three-component energy transfer relay system, consisting of cobalt carboxypeptidase, its fluorescent dansylated peptide substrates, and tryptophanyl residues of the enzyme. The mode of procedure can be applied generally to yield conjoint information on functional and structural aspects of active centers of enzymes.

摘要

本文描述了一种同时测量催化作用、酶-底物复合物活性位点部分与荧光底物部分之间的距离以及此类底物基团微环境的方法。通过由钴羧肽酶、其荧光丹磺酰化肽底物和该酶的色氨酸残基组成的三组分能量转移中继系统进行了说明。该程序模式可普遍应用,以提供有关酶活性中心功能和结构方面的联合信息。

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1
Surveyor substrates: energy-transfer gauges of active center topography during catalysis.测量底物:催化过程中活性中心拓扑结构的能量转移测量工具。
Proc Natl Acad Sci U S A. 1970 Nov;67(3):1383-9. doi: 10.1073/pnas.67.3.1383.
2
Distance measurements at the active site of carboxypeptidase A during catalysis.催化过程中羧肽酶A活性位点的距离测量。
Biochemistry. 1972 Aug 1;11(16):3015-22. doi: 10.1021/bi00766a013.
3
Direct observation of enzyme substrate complexes by stopped-flow fluorescence: mathematical analyses.通过停流荧光法直接观察酶-底物复合物:数学分析
Experientia. 1984 Nov 15;40(11):1197-206. doi: 10.1007/BF01946647.
4
Cryospectrokinetic characterization of intermediates in biochemical reactions: carboxypeptidase A.生化反应中间体的低温光谱动力学表征:羧肽酶A
Proc Natl Acad Sci U S A. 1984 Aug;81(16):5041-5. doi: 10.1073/pnas.81.16.5041.
5
Studies on the hydrolytic properties of (serine) carboxypeptidase Y.(丝氨酸)羧肽酶Y的水解特性研究。
Biochemistry. 1996 Jun 4;35(22):7131-41. doi: 10.1021/bi952758e.
6
[Theoretical conformational analysis of a substrate component of tetrahedral intermediates and of acyl-enzyme of carboxypeptidase A].[羧肽酶A的四面体中间体底物成分及酰基酶的理论构象分析]
Mol Biol (Mosk). 1981 Mar-Apr;15(2):408-23.
7
Comparative modeling of substrate binding in the S1' subsite of serine carboxypeptidases from yeast, wheat, and human.酵母、小麦和人类丝氨酸羧肽酶S1'亚位点底物结合的比较建模
Biochemistry. 1996 Nov 26;35(47):14899-909. doi: 10.1021/bi952833l.
8
Electrostatic potentials of proteins. 2. Role of electrostatics in a possible catalytic mechanism for carboxypeptidase A.蛋白质的静电势。2. 静电作用在羧肽酶A可能的催化机制中的作用。
J Am Chem Soc. 1976 Nov 24;98(24):7811-4. doi: 10.1021/ja00440a057.
9
[Specificity of enzymatic catalysis: alpha-chymotrypsin and carboxypeptidase A. Role of the enzyme active center metal and substrate hydrophobicity in binding and catalysis specificity].[酶催化的特异性:α-胰凝乳蛋白酶和羧肽酶A。酶活性中心金属和底物疏水性在结合及催化特异性中的作用]
Dokl Akad Nauk SSSR. 1977;234(4):964-7.
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Beta-secondary and solvent deuterium kinetic isotope effects on catalysis by the Streptomyces R61 DD-peptidase: comparisons with a structurally similar class C beta-lactamase.链霉菌R61 DD-肽酶催化作用的β-二级和溶剂氘动力学同位素效应:与结构相似的C类β-内酰胺酶的比较。
Biochemistry. 1999 Feb 2;38(5):1469-77. doi: 10.1021/bi982308x.

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Stopped-flow cryoenzymology: detection of catalytic intermediates not observable at ambient temperatures.停流低温酶学:检测在环境温度下无法观察到的催化中间体。
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8
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Energy transfer between terbium (III) and cobalt (II) in thermolysin: a new class of metal--metal distance probes.嗜热菌蛋白酶中铽(III)与钴(II)之间的能量转移:一类新型的金属-金属距离探针。
Proc Natl Acad Sci U S A. 1975 Dec;72(12):4764-8. doi: 10.1073/pnas.72.12.4764.

本文引用的文献

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ENERGY TRANSFER. A SYSTEM WITH RELATIVELY FIXED DONOR-ACCEPTOR SEPARATION.能量转移。一种供体-受体间距相对固定的系统。
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PROCEDURES FOR THE ISOLATION OF CRYSTALLINE BOVINE PANCREATIC CARBOXYPEPTIDASE A. II. ISOLATION OF CARBOXYPEPTIDASE A-ALPHA FROM PROCARBOXYPEPTIDASE A.结晶牛胰羧肽酶A的分离方法。II. 从羧肽酶原A中分离羧肽酶A-α
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Proc Natl Acad Sci U S A. 1963 Jan 15;49(1):109-16. doi: 10.1073/pnas.49.1.109.
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Metallocarboxypeptidases: stability constants and enzymatic characteristics.金属羧肽酶:稳定常数与酶学特性
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Kinetics of carboxypeptidase A. I. Hydrolysis of carbobenzoxyglycyl-l-phenylalanine, benzoylglycyl-l-phenylalanine, and hippuryl-dl-beta-phenyllactic acid by metal-substituted and acetylated carboxypeptidases.羧肽酶A的动力学。I. 金属取代的和乙酰化的羧肽酶对苄氧羰基甘氨酰-L-苯丙氨酸、苯甲酰甘氨酰-L-苯丙氨酸和马尿酸-DL-β-苯乳酸的水解作用
Biochemistry. 1968 Mar;7(3):1090-9. doi: 10.1021/bi00843a029.
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Intramolecular transfer of excitation from tryptophan to 1-dimethylaminonaphthalene 5-sulfonamide in a series of model compounds.在一系列模型化合物中,激发态从色氨酸到1-二甲基氨基萘-5-磺酰胺的分子内转移
Biochemistry. 1968 Feb;7(2):777-87. doi: 10.1021/bi00842a036.
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On the size of the active site in proteases. II. Carboxypeptidase-A.蛋白酶活性位点的大小。II. 羧肽酶A
Biochem Biophys Res Commun. 1967 Dec 29;29(6):862-7. doi: 10.1016/0006-291x(67)90299-9.
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Syncatalytic modification of a functional tyrosyl residue in aspartate aminotransferase.天冬氨酸转氨酶中一个功能性酪氨酰残基的同步催化修饰。
Biochemistry. 1970 Jul 21;9(15):3025-34. doi: 10.1021/bi00817a014.
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X-ray diffraction studies of enzymes.酶的X射线衍射研究。
Annu Rev Biochem. 1970;39:63-100. doi: 10.1146/annurev.bi.39.070170.000431.