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一些非解糖型和解糖型拟杆菌属菌种的数值分类学

Numerical taxonomy of some non-saccharolytic and saccharolytic Bacteroides species.

作者信息

Knivett V A, Shah H N, McKee A S, Hardie J M

出版信息

J Appl Bacteriol. 1983 Aug;55(1):71-80. doi: 10.1111/j.1365-2672.1983.tb02649.x.

Abstract

Various Bacteroides spp. were examined by physiological tests, presence of specific enzymes, antibiotic sensitivity, menaquinone composition and a few miscellaneous tests. The data matrix containing 58 strains and 55 unit characters was examined using Gower's similarity coefficients (SG) and included matching negative character states and multistate characters. The highly saccharolytic strains were separated from the less saccharolytic and non-fermentative strains at the 55% similarity level; while at the slightly higher level of 63% strains of Capnocytophaga (formerly Bact. ochraceus) were recovered as a compact phenon distinct from other saccharolytic species. The phenogram was divided into 6 clusters at 72% similarity level. Most of the 'Bact. fragilis group' of species clustered in one phenon while Bact. melaninogenicus ssp. melaninogenicus, Bact. bivius and a new species, Bact. denticola, formed another group. Another phenon comprised the saccharolytic non-pigmented species closely related to Bact. oralis such as Bact. buccalis and Bact. pentosaceus. The less saccharolytic strains of Bact. melaninogenicus ssp. intemedius and Bact. disiens were recovered in a distinct phenon. The low affinity (less than 55% similarity) between the two subspecies of Bact. melaninogenicus emphasised the need for reclassifying these taxa into separate species. The non-fermentative and very weakly saccharolytic strains formed good taxospecies. The separation of this cluster into three subclusters is in excellent agreement with chemotaxonomic data now available.

摘要

通过生理测试、特定酶的存在、抗生素敏感性、甲萘醌组成以及一些其他测试对各种拟杆菌属进行了检查。使用高尔相似系数(SG)对包含58个菌株和55个单位特征的数据矩阵进行了检查,其中包括匹配的阴性特征状态和多态特征。在55%相似性水平上,高糖分解菌株与低糖分解和非发酵菌株分离;而在略高的63%相似性水平上,二氧化碳嗜纤维菌属(以前的赭色拟杆菌)菌株作为一个紧密的分类群被分离出来,与其他糖分解物种不同。在72%相似性水平上,系统发育图被分为6个簇。大多数“脆弱拟杆菌群”物种聚集在一个分类群中,而产黑色素拟杆菌产黑色素亚种、双栖拟杆菌和一个新物种——龋齿拟杆菌形成了另一个群。另一个分类群包括与口腔拟杆菌密切相关的非色素糖分解物种,如颊拟杆菌和戊糖拟杆菌。产黑色素拟杆菌中间亚种和差异拟杆菌的低糖分解菌株在一个独特的分类群中被发现。产黑色素拟杆菌两个亚种之间的低亲和力(相似性低于55%)强调了将这些分类单元重新分类为不同物种的必要性。非发酵和极弱糖分解菌株形成了良好的分类种。将这个簇分为三个亚簇与现有的化学分类数据非常吻合。

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