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结构减法作为一种研究限制性内切酶作用机制的方法。

Structure subtraction as an approach to investigation of the mechanism of restriction enzyme action.

作者信息

Zinoviev V V, Gorbunov J A, Baclanov M M, Popov S G, Malygin E G

出版信息

FEBS Lett. 1983 Apr 18;154(2):282-4. doi: 10.1016/0014-5793(83)80166-5.

DOI:10.1016/0014-5793(83)80166-5
PMID:6299803
Abstract

Endonuclease BamHI cleaves the phosphodiester bonds between the guanine residues within the duplex DNA sequence G decreases GATCC. The substrate characteristics of oligonucleotides, containing some defects in the sequence recognized by endonuclease (nick, absence of some internucleotide phosphate or nucleotide, partially single-stranded form of the recognition site) were investigated. The results suggest that the specificity of synthetic oligonucleotide cleavage is strongly dependent on the ribosophosphate backbone intactness inside the recognition site. BamHI was found not to hydrolyse the phosphodiester bonds outside the double helix. Also BamHI forms a productive complex with the non-symmetrical substrate, having half the recognition sites, of a single strand.

摘要

核酸内切酶BamHI可切割双链DNA序列G↓GATCC中鸟嘌呤残基之间的磷酸二酯键。研究了在核酸内切酶识别序列中存在某些缺陷(切口、某些核苷酸间磷酸或核苷酸缺失、识别位点部分单链形式)的寡核苷酸的底物特性。结果表明,合成寡核苷酸切割的特异性强烈依赖于识别位点内核糖磷酸主链的完整性。发现BamHI不会水解双螺旋外的磷酸二酯键。此外,BamHI可与具有单链一半识别位点的非对称底物形成有效复合物。

相似文献

1
Structure subtraction as an approach to investigation of the mechanism of restriction enzyme action.结构减法作为一种研究限制性内切酶作用机制的方法。
FEBS Lett. 1983 Apr 18;154(2):282-4. doi: 10.1016/0014-5793(83)80166-5.
2
[Effect of the structure of oligonucleotide substrates on kinetic parameters of interaction with BamHI restrictase].
Mol Biol (Mosk). 1988 Jan-Feb;22(1):217-23.
3
Sequence-specific endonuclease BamHI: relaxation of sequence recognition.序列特异性内切酶BamHI:序列识别的松弛
Proc Natl Acad Sci U S A. 1982 Apr;79(8):2432-6. doi: 10.1073/pnas.79.8.2432.
4
[Chemical synthesis and properties of oligonucleotide substrates for restriction endonuclease BamHI and methyltransferase Eco dam].[限制性内切酶BamHI和甲基转移酶Eco dam的寡核苷酸底物的化学合成及性质]
Bioorg Khim. 1987 Dec;13(12):1629-37.
5
Selective inhibition of sequence-specific protein-DNA interactions by incorporation of 6-thioguanine: cleavage by restriction endonucleases.通过掺入6-硫鸟嘌呤选择性抑制序列特异性蛋白质-DNA相互作用:限制性内切核酸酶切割
Mol Pharmacol. 1991 Mar;39(3):299-306.
6
[Interaction of BamH1 restrictase with synthetic substrates containing complete or partial recognition sites of this enzyme].[BamH1限制性内切酶与含有该酶完整或部分识别位点的合成底物的相互作用]
Mol Biol (Mosk). 1984 Jan-Feb;18(1):169-75.
7
Interaction of EcoRII restriction and modification enzymes with synthetic DNA fragments. V. Study of single-strand cleavages.EcoRII限制酶与修饰酶与合成DNA片段的相互作用。V. 单链切割研究。
Nucleic Acids Res. 1985 Dec 20;13(24):8969-81. doi: 10.1093/nar/13.24.8969.
8
Sequence-specific BamHI endonuclease. The proposed role of arginine residues in substrate binding and recognition.序列特异性BamHI核酸内切酶。精氨酸残基在底物结合和识别中的假定作用。
J Biol Chem. 1985 Nov 15;260(26):14387-92.
9
Purification and properties of the BamHI endonuclease.BamHI核酸内切酶的纯化及性质
Methods Enzymol. 1980;65(1):147-53. doi: 10.1016/s0076-6879(80)65020-4.
10
Restriction endonuclease BamH1 interaction with a synthetic duplex containing half-size recognition sequences.限制性内切酶BamH1与含有半尺寸识别序列的合成双链体的相互作用。
FEBS Lett. 1981 Sep 14;132(1):98-100. doi: 10.1016/0014-5793(81)80436-x.

引用本文的文献

1
Interaction of the phage T4 Dam DNA-[N6-adenine] methyltransferase with oligonucleotides containing native or modified (defective) recognition sites.噬菌体T4 Dam DNA-[N6-腺嘌呤]甲基转移酶与含有天然或修饰(缺陷)识别位点的寡核苷酸的相互作用。
Nucleic Acids Res. 1997 Nov 1;25(21):4393-9. doi: 10.1093/nar/25.21.4393.