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多态性DNA的静电学

Electrostatics of Polymorphic DNA.

作者信息

Pullman B

机构信息

Institut de Biologie Physico-Chimique Laboratoire de Biochimie Theorique, associé au C.N.R.S., Paris, France.

出版信息

J Biomol Struct Dyn. 1983 Dec;1(3):773-94. doi: 10.1080/07391102.1983.10507481.

DOI:10.1080/07391102.1983.10507481
PMID:6400900
Abstract

The molecular electrostatic potential (MEP) and the molecular electrostatic field (MEF) are associated with significantly different patterns of distribution in the nucleic acids and their constituents. In particular, a) while the values of the minimal potentials at the reactive sites of the bases or at the phosphates increase manyfold when going from the subunits to the double helix, the values of the field undergo only very small changes under the same circumstances and b) while the deepest potentials are located in the grooves of the double helix, the greatest fields are concentrated on the phosphates of the backbone. They are also influenced differently by such environmental factors as counterion screening: while the absolute values of the potentials are profoundly reduced, the fields are increased with respect to those of the unscreened acids. MEP and MEF also govern the electrostatics of interaction of DNA with different types of species. The MEP being of particular significance in this respect for interaction with cations and the MEF for the association with neutral dipolar molecules. A number of examples are given to illustrate the significance of this situation for different conformers of DNA.

摘要

分子静电势(MEP)和分子静电场(MEF)与核酸及其组成成分中显著不同的分布模式相关。具体而言,a)当从亚基转变为双螺旋时,碱基或磷酸基团反应位点处的最小电势值会增加许多倍,而在相同情况下,电场值仅发生非常小的变化;b)虽然最深的电势位于双螺旋的凹槽中,但最大的电场集中在主链的磷酸基团上。它们还受到诸如抗衡离子屏蔽等环境因素的不同影响:虽然电势的绝对值会大幅降低,但与未屏蔽的酸相比,电场会增强。MEP和MEF还支配着DNA与不同类型物质相互作用的静电学。在这方面,MEP对于与阳离子的相互作用尤为重要,而MEF对于与中性偶极分子的缔合尤为重要。给出了许多例子来说明这种情况对于DNA不同构象的重要性。

相似文献

1
Electrostatics of Polymorphic DNA.多态性DNA的静电学
J Biomol Struct Dyn. 1983 Dec;1(3):773-94. doi: 10.1080/07391102.1983.10507481.
2
The dependence of the surface electrostatic potential of B-DNA on environmental factors.B-DNA表面静电势对环境因素的依赖性。
J Biomol Struct Dyn. 1985 Feb;2(5):1021-32. doi: 10.1080/07391102.1985.10507618.
3
Structure and dynamics of netropsin-poly(dA-dT).poly(dA-dT) complex: 500 MHz 1H NMR studies.纺锤菌素 - 聚(dA - dT)·聚(dA - dT)复合物的结构与动力学:500兆赫质子核磁共振研究
J Biomol Struct Dyn. 1984 Jun;1(6):1457-72. doi: 10.1080/07391102.1984.10507530.
4
Base pair opening pathways in B-DNA.B型DNA中的碱基对打开途径。
J Biomol Struct Dyn. 1990 Feb;7(4):915-33. doi: 10.1080/07391102.1990.10508532.
5
Distance-dependent dielectric constants and their application to double-helical DNA.距离相关的介电常数及其在双螺旋DNA中的应用。
Biopolymers. 1991 Nov;31(13):1615-29. doi: 10.1002/bip.360311316.
6
[Structure of poly(dA).poly(dT) from data of x-ray diffraction, energy calculations and nuclear magnetic resonance].[基于X射线衍射、能量计算和核磁共振数据的聚(dA)·聚(dT)结构]
Mol Biol (Mosk). 1987 Nov-Dec;21(6):1645-54.
7
The structure of poly(dA).poly(dT) as revealed by an X-ray fibre diffraction.X射线纤维衍射揭示的聚(dA)·聚(dT)结构。
J Biomol Struct Dyn. 1987 Jun;4(6):989-1012. doi: 10.1080/07391102.1987.10507693.
8
Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.基于蒙特卡洛计算的B型构象中寡聚(dA-dT)·寡聚(dA-dT)和寡聚(dA)·寡聚(dT)片段水化壳的结构
Biopolymers. 1990;30(5-6):563-81. doi: 10.1002/bip.360300509.
9
Poly(dA).poly(dT) is a B-type double helix with a distinctively narrow minor groove.聚(dA)·聚(dT)是一种具有明显狭窄小沟的B型双螺旋结构。
Nature. 1987;325(6107):821-3. doi: 10.1038/325821a0.
10
[Structure of the B-form of DNA using the homopolymer poly(dA) . poly(dT) as an example. Refinement in accordance with x-ray and energy criteria].[以均聚物聚(dA)·聚(dT)为例的DNA B型结构。根据X射线和能量标准进行的精修]
Biofizika. 1979 Jul-Aug;24(4):765-9.

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1
Base-pair opening and spermine binding--B-DNA features displayed in the crystal structure of a gal operon fragment: implications for protein-DNA recognition.碱基对打开与精胺结合——半乳糖操纵子片段晶体结构中显示的B型DNA特征:对蛋白质-DNA识别的影响
Nucleic Acids Res. 1995 Jun 11;23(11):2065-73. doi: 10.1093/nar/23.11.2065.
2
Reaction of DNA with chemically or enzymatically activated mitomycin C: isolation and structure of the major covalent adduct.DNA与化学或酶促活化的丝裂霉素C的反应:主要共价加合物的分离与结构
Proc Natl Acad Sci U S A. 1986 Sep;83(18):6702-6. doi: 10.1073/pnas.83.18.6702.