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通过紫外吸收和傅里叶变换红外光谱法测定枯草芽孢杆菌核糖体5S RNA中的碱基配对。

Base pairing in Bacillus subtilis ribosomal 5S RNA as measured by ultraviolet absorption and Fourier-transform infrared spectrometry.

作者信息

Chang L H, Burkey K O, Alben J O, Marshall A G

出版信息

Biochemistry. 1984 Jul 31;23(16):3659-62. doi: 10.1021/bi00311a013.

DOI:10.1021/bi00311a013
PMID:6433974
Abstract

Ultraviolet (260 and 280 nm) and Fourier-transform infrared (FT-IR) spectra of Bacillus subtilis ribosomal 5S RNA have been acquired between 20 and 90 degrees C. In the presence of added Mg2+, the average UV melting midpoint, Tm, is 60 (A260) or 62 degrees C (A280), resolving into two components (Tm = 54 and 68 degrees C). In the presence of 10 mM Mg2+, the normalized A260 increases by about 5%, and the average Tm increases to 70 degrees C (A260 or A280), resolving into components at 63 and 73 degrees C at 260 nm but not resolved at 280 nm. From the difference of the 5S RNA FT-IR spectra between 90 and 30 degrees C, the number of base pairs in B. subtilis 5S RNA was determined by the procedure outlined in the accompanying paper [Li, S.-J., Burkey, K. O., Luoma, G. A., Alben, J. O., & Marshall, A. G. (1984) Biochemistry (preceding paper in this issue)]. Addition of 10 mM Mg2+ increases the number of A-U pairs by 1 (from 11 to 12) and the number of G-C pairs by 2 (from 15 to 17). FT-IR melting curve midpoints show that addition of Mg2+ increases the melting point for both A-U and G-C pairs in B. subtilis 5S RNA. The A-U pairs melt before G-C pairs (56 vs. 64 degrees C) in the absence of Mg2+, but both types of pairs melt at the same temperature (67 vs. 70 degrees C) in the presence of Mg2+.(ABSTRACT TRUNCATED AT 250 WORDS)

摘要

已在20至90摄氏度之间获取了枯草芽孢杆菌核糖体5S RNA的紫外(260和280纳米)光谱和傅里叶变换红外(FT - IR)光谱。在添加Mg2 +的情况下,平均紫外熔解中点,即解链温度(Tm),在260纳米处为60摄氏度,在280纳米处为62摄氏度,可分解为两个组分(Tm = 54和68摄氏度)。在存在10 mM Mg2 +的情况下,归一化的A260增加约5%,平均Tm增加到70摄氏度(260纳米或280纳米处),在260纳米处分解为63和73摄氏度的组分,但在280纳米处未分解。根据90至30摄氏度之间5S RNA的FT - IR光谱差异,按照随附论文[Li, S.-J., Burkey, K. O., Luoma, G. A., Alben, J. O., & Marshall, A. G. (1984) Biochemistry(本期前一篇论文)]中概述的程序确定了枯草芽孢杆菌5S RNA中的碱基对数量。添加10 mM Mg2 +会使A - U对的数量增加1个(从11个增加到12个),G - C对的数量增加2个(从15个增加到17个)。FT - IR熔解曲线中点表明,添加Mg2 +会提高枯草芽孢杆菌5S RNA中A - U对和G - C对的熔点。在不存在Mg2 +的情况下,A - U对比G - C对先熔解(56摄氏度对64摄氏度),但在存在Mg2 +的情况下,两种类型的碱基对在相同温度下熔解(67摄氏度对70摄氏度)。(摘要截断于250字)

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