Poulsen F R, Lowy J
J Mol Biol. 1984 Mar 25;174(1):239-47. doi: 10.1016/0022-2836(84)90376-0.
A method that relates molecular structure to the forces that maintain it and to its X-ray diffraction pattern is described and applied to muscle. In a computer model, the potential energy of the movable components (here the myosin heads) is minimized by letting them move down the steepest gradient in three dimensions from a variety of starting positions. Initial values are assumed for the parameters that determine the forces, and for those that define the structure and arrangement of the fixed components. The X-ray pattern expected from the resulting structures can be calculated in a straightforward manner and compared with relevant observed data. Discrepancies can then be minimized by varying the values initially assumed for the parameters, as in the conventional "trial and error" method. This first application of the present method is concerned with the effects of the hexagonal lattice on the myosin head configuration in thick filaments of the type found in vertebrate skeletal muscle. For that purpose, a very simple model was used with the following main features: smooth cylinders for the thin filaments and for the thick filament backbones, two spherical heads attached by Hookean springs to each point of a 9/3 helix on the surface of the backbone, and repulsive forces of the electrostatic double-layer type acting between each head and all other surfaces. The myosin head configuration was calculated for an isolated thick filament and a study was made of the effects of packing such filaments into a hexagonal lattice of various side spacings in the presence or absence of thin filaments. For the isolated filament, it was found that the 9/3 helical symmetry is maintained in the myosin head configuration and that the two heads of each molecule are splayed azimuthally. When such filaments are packed into the hexagonal lattice with thin filaments present, the 9/3 helical symmetry of the myosin head configuration is lost. As the lattice side spacing is reduced, the myosin heads become increasingly displaced not only in the radial and azimuthal directions but also in the axial direction, although they interact primarily with smooth cylinders. The axial separation of the two heads in each molecule becomes different in one level from that in the other two in the 43 nm axial repeat, thus increasing the repeat in projection onto the axis from 14.3 to 43 nm. This effect may contribute to the "forbidden meridionals" described by Huxley & Brown (1967).(ABSTRACT TRUNCATED AT 400 WORDS)
描述了一种将分子结构与其维持力及X射线衍射图谱相关联的方法,并将其应用于肌肉研究。在一个计算机模型中,通过让可移动部件(此处为肌球蛋白头部)从各种起始位置在三维空间中沿最陡梯度移动,使可移动部件的势能最小化。对于确定力的参数以及定义固定部件的结构和排列的参数,假定其初始值。可以直接计算由此产生的结构所预期的X射线图谱,并与相关的观测数据进行比较。然后,如同传统的“试错”方法一样,通过改变最初假定的参数值,使差异最小化。本方法的首次应用涉及六边形晶格对脊椎动物骨骼肌中发现的那种类型的粗肌丝中肌球蛋白头部构型的影响。为此,使用了一个非常简单的模型,其主要特征如下:细肌丝和粗肌丝主干为光滑圆柱体,两个球形头部通过胡克弹簧连接到主干表面9/3螺旋的每个点上,并且在每个头部与所有其他表面之间存在静电双层类型的排斥力。计算了孤立粗肌丝的肌球蛋白头部构型,并研究了在存在或不存在细肌丝的情况下,将这些粗肌丝堆积成具有不同侧向间距的六边形晶格的影响。对于孤立的粗肌丝,发现肌球蛋白头部构型中保持了9/3螺旋对称性,并且每个分子的两个头部在方位上展开。当这些粗肌丝与细肌丝一起堆积到六边形晶格中时,肌球蛋白头部构型的9/3螺旋对称性丧失。随着晶格侧向间距减小,肌球蛋白头部不仅在径向和方位方向上,而且在轴向方向上的位移越来越大,尽管它们主要与光滑圆柱体相互作用。每个分子中两个头部的轴向间距在43nm轴向重复中,在一个层面上与另外两个层面不同,从而使在轴向上投影的重复从14.3nm增加到43nm。这种效应可能有助于解释赫胥黎和布朗(1967年)所描述的“禁线”。(摘要截于400字)