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小鼠核糖体RNA基因的斑驳染色质结构。

Varigated chromatin structures of mouse ribosomal RNA genes.

作者信息

Davis A H, Reudelhuber T L, Garrard W T

出版信息

J Mol Biol. 1983 Jun 15;167(1):133-55. doi: 10.1016/s0022-2836(83)80038-2.

DOI:10.1016/s0022-2836(83)80038-2
PMID:6864798
Abstract

We have employed a chromatin fractionation procedure on micrococcal nuclease-digested nuclei to examine the chromatin structure of mouse ribosomal RNA genes in two systems that differ by at least 14-fold in the level of ribosomal RNA transcription. In a cultured cell line enriched in transcriptionally active ribosomal chromatin, most ribosomal sequences are preferentially sensitive to digestion by micrococcal nuclease, reside in an insoluble chromatin fraction, and lack typical nucleosomal packaging; only minor amounts of ribosomal sequences are packaged into soluble, nucleosomal chromatin. By contrast, in adult liver, which is enriched in transcriptionally inactive ribosomal chromatin, the majority of ribosomal genes are packaged into soluble, nucleosomal chromatin. However, a significant fraction of liver ribosomal chromatin is insoluble and possesses a non-nucleosomal structure. Therefore, within a single cell population or tissue, mouse ribosomal RNA genes are organized into both nucleosomal and non-nucleosomal chromatin structures. We suggest that these structures have functional significance.

摘要

我们采用了一种对微球菌核酸酶消化的细胞核进行染色质分级分离的方法,以研究小鼠核糖体RNA基因在两个核糖体RNA转录水平相差至少14倍的系统中的染色质结构。在一个富含转录活性核糖体染色质的培养细胞系中,大多数核糖体序列对微球菌核酸酶的消化具有优先敏感性,存在于不溶性染色质部分,并且缺乏典型的核小体包装;只有少量的核糖体序列被包装成可溶性的核小体染色质。相比之下,在富含转录无活性核糖体染色质的成年肝脏中,大多数核糖体基因被包装成可溶性的核小体染色质。然而,相当一部分肝脏核糖体染色质是不溶性的,并且具有非核小体结构。因此,在单个细胞群体或组织内,小鼠核糖体RNA基因被组织成核小体和非核小体染色质结构。我们认为这些结构具有功能意义。

相似文献

1
Varigated chromatin structures of mouse ribosomal RNA genes.小鼠核糖体RNA基因的斑驳染色质结构。
J Mol Biol. 1983 Jun 15;167(1):133-55. doi: 10.1016/s0022-2836(83)80038-2.
2
Chromatin structure along the ribosomal DNA of Dictyostelium. Regional differences and changes accompanying cell differentiation.盘基网柄菌核糖体DNA上的染色质结构。区域差异及伴随细胞分化的变化。
J Mol Biol. 1983 May 25;166(3):361-81. doi: 10.1016/s0022-2836(83)80090-4.
3
Nucleosome disruption precedes transcription and is largely limited to the transcribed domain of globin genes in murine erythroleukemia cells.
J Mol Biol. 1985 Mar 5;182(1):109-29. doi: 10.1016/0022-2836(85)90031-2.
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Different nucleosome spacing in transcribed and non-transcribed regions of the ribosomal RNA gene in Tetrahymena thermophila.嗜热四膜虫核糖体RNA基因转录区和非转录区不同的核小体间距
Nucleic Acids Res. 1983 Apr 11;11(7):2093-109. doi: 10.1093/nar/11.7.2093.
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Sequence-specific cleavage of chromatin by staphylococcal nuclease can generate an atypical nucleosome pattern.葡萄球菌核酸酶对染色质进行序列特异性切割可产生非典型核小体模式。
Nucleic Acids Res. 1982 Jul 24;10(14):4121-33. doi: 10.1093/nar/10.14.4121.
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The organization of oligonucleosomes in yeast.酵母中寡核小体的组织形式。
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Transcribed and non-transcribed regions of Tetrahymena ribosomal gene chromatin have different accessibilities to micrococcal nuclease.嗜热四膜虫核糖体基因染色质的转录区和非转录区对微球菌核酸酶的可及性不同。
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8
Non-nucleosomal packaging of a tandemly repeated DNA sequence at termini of extrachromosomal DNA coding for rRNA in Tetrahymena.嗜热四膜虫染色体外DNA编码rRNA末端串联重复DNA序列的非核小体包装。
Proc Natl Acad Sci U S A. 1981 Apr;78(4):2263-7. doi: 10.1073/pnas.78.4.2263.
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Association of poly(adenosine diphosphate ribosylated) nucleosomes with transcriptionally active and inactive regions of chromatin.多(聚腺苷二磷酸核糖基化)核小体与染色质转录活性和非活性区域的关联。
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The protamine gene chromatin in developing trout testis exists in an altered state.发育中的虹鳟鱼睾丸中的鱼精蛋白基因染色质处于一种改变的状态。
Biochim Biophys Acta. 1989 Jan 23;1007(1):23-9. doi: 10.1016/0167-4781(89)90125-5.

引用本文的文献

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Psoralen Crosslinking-Chromatin Endogenous Cleavage Assay to Examine Histone DNA Interactions of Active and Inactive rRNA Genes.补骨脂素交联-染色质内源切割分析以检测活性和非活性rRNA基因的组蛋白-DNA相互作用
Methods Mol Biol. 2025;2919:133-154. doi: 10.1007/978-1-0716-4486-7_8.
2
The nucleosome structure of the rRNA genes of some tumorous and nontumorous Nicotiana cell lines.某些肿瘤和非肿瘤烟草细胞系 rRNA 基因的核小体结构。
Plant Mol Biol. 1985 Jul;5(4):247-55. doi: 10.1007/BF00020642.
3
Chromatin structure of integrated T-DNA in crown gall tumors.
整合 T-DNA 在冠瘿瘤中的染色质结构。
Plant Mol Biol. 1987 Mar;8(2):159-68. doi: 10.1007/BF00025327.
4
macroH2A1 histone variants are depleted on active genes but concentrated on the inactive X chromosome.巨H2A1组蛋白变体在活跃基因上缺失,但集中在失活的X染色体上。
Mol Cell Biol. 2006 Jun;26(12):4410-20. doi: 10.1128/MCB.02258-05.
5
Global survey of chromatin accessibility using DNA microarrays.利用DNA微阵列对染色质可及性进行全球调查。
Genome Res. 2004 Jul;14(7):1374-81. doi: 10.1101/gr.1396104.
6
Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures.核糖体基因簇在番茄叶细胞和指数生长的悬浮培养物中的开放和封闭染色质结构之间具有独特的比例。
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5256-60. doi: 10.1073/pnas.89.12.5256.
7
Binding of sequences from the 5'- and 3'-nontranscribed spacers of the rat rDNA locus to the nucleolar matrix.大鼠核糖体DNA基因座5′-和3′-非转录间隔区序列与核仁基质的结合。
Chromosoma. 1993 Mar;102(4):287-95. doi: 10.1007/BF00352403.
8
Visualization of focal sites of transcription within human nuclei.人类细胞核内转录焦点位点的可视化。
EMBO J. 1993 Mar;12(3):1059-65. doi: 10.1002/j.1460-2075.1993.tb05747.x.
9
Signals in chicken beta-globin DNA influence chromatin assembly in vitro.鸡β-珠蛋白DNA中的信号在体外影响染色质组装。
Mol Cell Biol. 1993 Dec;13(12):7596-603. doi: 10.1128/mcb.13.12.7596-7603.1993.
10
Micrococcal nuclease digestion of nuclei reveals extended nucleosome ladders having anomalous DNA lengths for chromatin assembled on non-replicating plasmids in transfected cells.对细胞核进行微球菌核酸酶消化后发现,在转染细胞中,对于组装在非复制性质粒上的染色质而言,其核小体梯带延长且DNA长度异常。
Nucleic Acids Res. 1994 Feb 11;22(3):370-5. doi: 10.1093/nar/22.3.370.