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多头绒泡菌核DNA克隆片段中回文序列和重复序列的分析

Analysis of foldback sequences and repetitive sequences in cloned segments of nuclear DNA from Physarum polycephalum.

作者信息

McLachlan A, Hardman N

出版信息

Biochim Biophys Acta. 1982 Apr 26;697(1):89-100. doi: 10.1016/0167-4781(82)90049-5.

DOI:10.1016/0167-4781(82)90049-5
PMID:6896288
Abstract

The properties of DNA segments containing foldback elements were studied after their selection from a "random" recombinant library of Physarum polycephalum nuclear DNA sequences, cloned using the plasmid vector pBR322. Hybridisation of in vitro labelled recombinant plasmids to Southern blots of genomic restriction fragments demonstrated that each cloned segment contained repetitive elements located at several hundred sites in the genome. Two of the DNA clones generated hybridisation patterns which suggested that they contain repetitive elements with internal cleavage sites for the restriction endonuclease HaeIII. Cross-hybridisation of all combinations of the cloned sequences showed that most contain different arrangements of repetitive elements derived from different sequence families. The results are consistent with a model proposed previously on the basis of studies on total nuclear DNA, for the organisation of sequences closely associated with foldback elements in the Physarum genome.

摘要

从多头绒泡菌核DNA序列的“随机”重组文库中选出含有回文元件的DNA片段,用质粒载体pBR322进行克隆后,对其特性进行了研究。体外标记的重组质粒与基因组限制性片段的Southern印迹杂交表明,每个克隆片段都含有位于基因组数百个位点的重复元件。其中两个DNA克隆产生的杂交模式表明,它们含有对限制性内切酶HaeIII具有内部切割位点的重复元件。克隆序列所有组合的交叉杂交表明,大多数含有来自不同序列家族的重复元件的不同排列。这些结果与先前基于对总核DNA的研究提出的关于多头绒泡菌基因组中与回文元件紧密相关的序列组织的模型一致。

相似文献

1
Analysis of foldback sequences and repetitive sequences in cloned segments of nuclear DNA from Physarum polycephalum.多头绒泡菌核DNA克隆片段中回文序列和重复序列的分析
Biochim Biophys Acta. 1982 Apr 26;697(1):89-100. doi: 10.1016/0167-4781(82)90049-5.
2
Sequence organisation in nuclear DNA from Physarum polycephalum. Genomic organisation of DNA segments containing foldback sequences.多头绒泡菌核DNA的序列组织。含有回文序列的DNA片段的基因组组织。
Biochim Biophys Acta. 1983 Nov 17;741(2):204-13. doi: 10.1016/0167-4781(83)90060-x.
3
Sequence organisation in nuclear DNA from Physarum polycephalum. Arrangement of highly-repeated sequences.多头绒泡菌核DNA中的序列组织。高度重复序列的排列。
Biochim Biophys Acta. 1983 Nov 17;741(2):214-23. doi: 10.1016/0167-4781(83)90061-1.
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Sequence organisation in nuclear DNA from Physarum polycephalum. Interspersion of repetitive and single-copy sequences.多头绒泡菌核DNA的序列组织。重复序列和单拷贝序列的散布情况。
Eur J Biochem. 1980 Jan;103(2):247-57. doi: 10.1111/j.1432-1033.1980.tb04309.x.
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Sequence organisation in nuclear DNA from Physarum polycephalum: methylation of repetitive sequences.多头绒泡菌核DNA的序列组织:重复序列的甲基化
Nucleic Acids Res. 1981 Feb 25;9(4):801-14. doi: 10.1093/nar/9.4.801.
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Periodic organisation of foldback sequences in Physarum polycephalum nuclear DNA.多头绒泡菌核DNA中回文序列的周期性组织
Nucleic Acids Res. 1978 Jul;5(7):2405-23. doi: 10.1093/nar/5.7.2405.
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Distribution of inverted repeat sequences in nuclear DNA from Physarum polycephalum.多头绒泡菌核DNA中反向重复序列的分布
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An abundant family of methylated repetitive sequences dominates the genome of Physarum polycephalum.一个丰富的甲基化重复序列家族在多头绒泡菌的基因组中占主导地位。
Nucleic Acids Res. 1983 Nov 25;11(22):7777-88. doi: 10.1093/nar/11.22.7777.
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Coordinate replication of dispersed repetitive sequences in Physarum polycephalum.多头绒泡菌中分散重复序列的协同复制
Exp Cell Res. 1989 Apr;181(2):505-17. doi: 10.1016/0014-4827(89)90107-9.
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Structural organization of a hypermethylated nuclear DNA component in Physarum polycephalum.多头绒泡菌中一种高度甲基化的核DNA组分的结构组织
J Gen Microbiol. 1985 May;131(5):1157-65. doi: 10.1099/00221287-131-5-1157.

引用本文的文献

1
Transposon-like properties of the major, long repetitive sequence family in the genome of Physarum polycephalum.多头绒泡菌基因组中主要长重复序列家族的转座子样特性。
EMBO J. 1985 Dec 16;4(13A):3557-62. doi: 10.1002/j.1460-2075.1985.tb04117.x.
2
An abundant family of methylated repetitive sequences dominates the genome of Physarum polycephalum.一个丰富的甲基化重复序列家族在多头绒泡菌的基因组中占主导地位。
Nucleic Acids Res. 1983 Nov 25;11(22):7777-88. doi: 10.1093/nar/11.22.7777.
3
Identification of a second retrotransposon-related element in the genome of Physarum polycephalum.
多头绒泡菌基因组中第二个反转录转座子相关元件的鉴定
Curr Genet. 1990 May;17(5):403-8. doi: 10.1007/BF00334518.
4
Retrotransposon-like nature of Tp1 elements: implications for the organisation of highly repetitive, hypermethylated DNA in the genome of Physarum polycephalum.Tp1元件的类逆转座子性质:对多头绒泡菌基因组中高度重复、超甲基化DNA组织的影响
Nucleic Acids Res. 1991 Jan 25;19(2):279-86. doi: 10.1093/nar/19.2.279.