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1
The ten helical twist angles of B-DNA.
Nucleic Acids Res. 1982 Feb 11;10(3):1097-104. doi: 10.1093/nar/10.3.1097.
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A molecular mechanical model to predict the helix twist angles of B-DNA.
Nucleic Acids Res. 1984 Apr 11;12(7):3343-56. doi: 10.1093/nar/12.7.3343.
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Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.
J Mol Biol. 1996 May 31;259(1):95-103. doi: 10.1006/jmbi.1996.0304.
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Sequence-dependent twist-bend coupling in DNA minicircles.
Nanoscale. 2021 Dec 13;13(47):20186-20196. doi: 10.1039/d1nr04672a.
7
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.
Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2312-6. doi: 10.1073/pnas.88.6.2312.
8
Local sequential minimization of double stranded B-DNA using Monte Carlo annealing.
J Mol Model. 2004 Jun;10(3):185-97. doi: 10.1007/s00894-004-0182-0. Epub 2004 Mar 24.
9
Sequence dependence of DNA conformational flexibility.
Biochemistry. 1989 Sep 19;28(19):7842-9. doi: 10.1021/bi00445a046.
10
Local variability and base sequence effects in DNA crystal structures.
J Biomol Struct Dyn. 1990 Dec;8(3):539-72. doi: 10.1080/07391102.1990.10507828.

引用本文的文献

1
The XNA alphabet.
Nucleic Acids Res. 2025 Jul 8;53(13). doi: 10.1093/nar/gkaf635.
2
DNA simulation benchmarks revealed with the accumulation of high-resolution structures.
Biophys Rev. 2024 Jun 18;16(3):275-284. doi: 10.1007/s12551-024-01198-2. eCollection 2024 Jun.
3
Special issue: Multiscale simulations of DNA from electrons to nucleosomes.
Biophys Rev. 2024 Jul 3;16(3):259-262. doi: 10.1007/s12551-024-01204-7. eCollection 2024 Jun.
5
emDNA - A Tool for Modeling Protein-decorated DNA Loops and Minicircles at the Base-pair Step Level.
J Mol Biol. 2022 Jun 15;434(11):167558. doi: 10.1016/j.jmb.2022.167558. Epub 2022 Mar 24.
6
Nucleosome-induced homology recognition in chromatin.
J R Soc Interface. 2021 Jun;18(179):20210147. doi: 10.1098/rsif.2021.0147. Epub 2021 Jun 16.
8
Multiple plasmid origin-of-transfer regions might aid the spread of antimicrobial resistance to human pathogens.
Microbiologyopen. 2020 Dec;9(12):e1129. doi: 10.1002/mbo3.1129. Epub 2020 Oct 27.
9
Silver-Mediated Double Helix: Structural Parameters for a Robust DNA Building Block.
ACS Omega. 2017 Oct 31;2(10):7343-7348. doi: 10.1021/acsomega.7b01089. Epub 2017 Oct 27.
10
Contributions of Sequence to the Higher-Order Structures of DNA.
Biophys J. 2017 Feb 7;112(3):416-426. doi: 10.1016/j.bpj.2016.11.017. Epub 2016 Dec 9.

本文引用的文献

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Helical periodicity of DNA, Poly(dA) . poly(dT) and poly(dA-dT). poly(dA-dT) in solution.
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Structure of a B-DNA dodecamer. II. Influence of base sequence on helix structure.
J Mol Biol. 1981 Jul 15;149(4):761-86. doi: 10.1016/0022-2836(81)90357-0.
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Sequence-dependent helical periodicity of DNA.
Nature. 1981 Jul 23;292(5821):378-80. doi: 10.1038/292378a0.
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Sequence dependence of the helical repeat of DNA in solution.
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