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动态蛋白质结构。pH对牛心肌红蛋白羰基配体结合位点构象稳定性的影响。

Dynamic protein structures. Effects of pH on conformer stabilities at the ligand-binding site of bovine heart myoglobin carbonyl.

作者信息

Shimada H, Caughey W S

出版信息

J Biol Chem. 1982 Oct 25;257(20):11893-900.

PMID:7118916
Abstract

The single ligand-binding site of bovine myoglobin carbonyl exists in four discrete conformations as shown by four C--O stretch bands for the carbonyl ligand. Both this infrared spectrum and the visible spectrum are altered by changes in pH from 4.7 to 8.2 at 20 degrees C. The spectral changes can be related to monoprotonation or monodeprotonation at a protein residue with a pKa = 6.0 +/- 0.2. Below pH 5.5, an additional proton-coupled infrared spectral change is evident. Histidine is an appropriate site for pKa approximately 6; there are 13 histidines in the protein. However, the nature of the pH effects on infrared spectra indicates that neither the proximal nor the distal histidine is a likely site. The state of protonation of the protein has a marked effect on the relative stabilities of the four conformers but appears to have little effect on the discrete conformer structures per se in that C--O stretch band frequencies and shapes are nearly insensitive to changes in pH. The sum of the four integrated infrared band intensities is similarly insensitive. These findings provide strong support for the presence of four conformers of significantly different structure at the heme ligand-binding site and for rapid interconversions among these structures.

摘要

牛肌红蛋白羰基的单一配体结合位点以四种离散构象存在,羰基配体的四条C—O伸缩带表明了这一点。在20℃下,从pH 4.7到8.2的变化会改变这种红外光谱和可见光谱。光谱变化可能与pKa = 6.0±0.2的蛋白质残基处的单质子化或单去质子化有关。在pH 5.5以下,明显出现了另一种质子耦合的红外光谱变化。组氨酸是pKa约为6的合适位点;该蛋白质中有13个组氨酸。然而,pH对红外光谱影响的性质表明,近端组氨酸和远端组氨酸都不太可能是该位点。蛋白质的质子化状态对四种构象体的相对稳定性有显著影响,但似乎对离散构象体结构本身影响不大,因为C—O伸缩带频率和形状对pH变化几乎不敏感。四条积分红外带强度之和同样不敏感。这些发现为血红素配体结合位点存在四种结构显著不同的构象体以及这些结构之间的快速相互转化提供了有力支持。

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