Lando D Iu, Ivanova M A, Akhrem A A
Mol Biol (Mosk). 1980 Nov-Dec;14(6):1281-8.
The influence of a change in DNA-ligand complex stoichiometry in the process of denaturation on temperature and temperature range width of helix-coil transition (Tm, delta T) has been considered. The stoichiometry is characterized by two parameters: by the number of base pairs covered with one ligand (m) and by the number of base pairs per one binding centre (r). It is shown that the change of r and m during denaturation strongly influences the DNA melting process. If the product rm doesn't change during denaturation, the melting temperature shift caused by a ligand concentration growth has a finite limit. If r1m1 not equal to r2m2 (index 1 is related to the coil DNA from and index 2--to the helix DNA form), the melting temperature during concentration growth aspires to + infinity, when r1m1 > r2m2, and to absolute zero, when r1m1 < r2m2. The sign of the effect (stabilization or destabilization) is independent of a binding constant and a factor of cooperativity of DNA-ligand interaction. Dependences of Tm and delta T on ligand concentration for different r1, r2, m1, m2 are analysed.
研究了DNA - 配体复合物化学计量变化在变性过程中对螺旋 - 线圈转变的温度和温度范围宽度(Tm,ΔT)的影响。化学计量由两个参数表征:被一个配体覆盖的碱基对数(m)和每个结合中心的碱基对数(r)。结果表明,变性过程中r和m的变化强烈影响DNA的解链过程。如果变性过程中rm不变,配体浓度增加引起的解链温度变化有一个有限的极限。如果r1m1不等于r2m2(下标1与线圈状DNA形式相关,下标2与螺旋状DNA形式相关),当r1m1 > r2m2时,浓度增加时解链温度趋向于正无穷大;当r1m1 < r2m2时,解链温度趋向于绝对零度。这种效应(稳定或不稳定)的符号与结合常数和DNA - 配体相互作用的协同因子无关。分析了不同r1、r2、m1、m2时Tm和ΔT对配体浓度的依赖性。