The linkage disequilibrium which measures the association between linked genes is a temporary phenomenon in a population because of crossing over. But such associations persist in HLA system. These persistent linkage disequilibria may be due to the very small fraction of recombinaison between the loci but other explanations are possible: selection or migration. A linkage disequilibrium produces a phenotypic correlation in a population. A phenotypic correlation may be due to pleiotropic effect of a gene, or epistasie of two genes, or population stratification... On the same hand, if a correlation appears in an inter population study, it may be due to a migration or a subdivided population. In medical genetics the research of such association intra or inter population studies may permit to point out a defect gene. In particular, HLA system study has proved that many susceptibility genes of various diseases are linked to B or D alleles.
衡量连锁基因之间关联的连锁不平衡在群体中是一种因交叉而产生的暂时现象。但这种关联在HLA系统中持续存在。这些持续的连锁不平衡可能是由于基因座之间重组的比例非常小,但也可能有其他解释:选择或迁移。连锁不平衡在群体中产生表型相关性。表型相关性可能是由于一个基因的多效性效应、两个基因的上位性或群体分层……另一方面,如果在群体间研究中出现相关性,可能是由于迁移或细分群体。在医学遗传学中,在群体内或群体间研究中对这种关联的研究可能有助于指出缺陷基因。特别是,HLA系统研究已证明,各种疾病的许多易感基因与B或D等位基因连锁。