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一种用于计算多位点滴定曲线的简单算法。

A simple algorithm for the calculation of multiple site titration curves.

作者信息

Karshikoff A

机构信息

Centre for Structural Biochemistry, Novum, Karolinska Institute, Huddinge, Sweden.

出版信息

Protein Eng. 1995 Mar;8(3):243-8. doi: 10.1093/protein/8.3.243.

Abstract

A simple algorithm for the calculation of multiple site titration curves is proposed. It is based on a hybridization of two computational techniques: (i) a modified Tanford-Roxby iterative procedure [Tanford and Roxby (1972) Biochemistry, 11, 2193-2198] and (ii) the Boltzmann statistics. The sites characterized by strong electrostatic coupling were selected for statistical mechanical treatment, whereas all other sites were treated by means of the modified Tanford-Roxby procedure. The selection of the two sets was made on the basis of a criterion related to the interaction energy between the titratable sites in the protein molecule. The algorithm was tested for bovine pancreatic trypsin inhibitor and the pK values calculated were discussed in the light of experimental data and theoretical results obtained by other authors. The algorithm can easily be coded and incorporated into any program package for the calculation of electrostatic interactions in proteins.

摘要

本文提出了一种用于计算多位点滴定曲线的简单算法。该算法基于两种计算技术的结合:(i)一种改进的坦福德 - 罗克斯比迭代程序[坦福德和罗克斯比(1972年),《生物化学》,11,2193 - 2198]和(ii)玻尔兹曼统计。将具有强静电耦合特征的位点选作统计力学处理对象,而所有其他位点则通过改进的坦福德 - 罗克斯比程序进行处理。两组位点的选择是基于与蛋白质分子中可滴定位点之间相互作用能相关的标准。该算法已针对牛胰蛋白酶抑制剂进行了测试,并根据其他作者获得的实验数据和理论结果对计算得到的pK值进行了讨论。该算法可以轻松编码并纳入任何用于计算蛋白质静电相互作用的程序包中。

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