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基于λ噬菌体的互补分析用于从大蓝鼠中初步定位lacI突变体的方法:对DNA测序策略的启示

Development of a lambda-based complementation assay for the preliminary localization of lacI mutants from the Big Blue mouse: implications for a DNA-sequencing strategy.

作者信息

Gu M, Ahmed A, Wei C, Gorelick N, Glickman B W

机构信息

Centre for Environmental Health, University of Victoria, BC, Canada.

出版信息

Mutat Res. 1994 Jun 1;307(2):533-40. doi: 10.1016/0027-5107(94)90264-x.

Abstract

The Big Blue transgenic mouse carrying the E. coli lacI gene as a mutational target in a lambda-based shuttle vector has been receiving increasing attention in genotoxicity testing because it offers the potential of studying mutation in a mammalian system in vivo. The system not only provides information on mutant frequency, but it also offers the potential of providing information about mutational specificity. Such data is not only important for studies of mutational mechanisms; it offers a critical advantage for determining the mutational response at levels where significant increases in mutant frequency have not been discerned. The repeated sequencing of the entire 1080-bp lacI target, however, remains a formidable task. Here we report on the adaptation of the "negative complementation" assay for the lacI-d phenotype to accommodate the lambda lacI recovered from the Big Blue transgenic animal. This assay permits the localization of mutations to an approximately 330-bp region to facilitate the production of mutational specificity data. The assay is based upon lysogenization of the lambda containing the lacI mutation into a lacI+ host. Of 107 sequenced lacI mutants recovered from Big Blue mice, 74 were identified as NC+ (lacI-d) using this assay. Of these 74, 49 occurred in the region 32-208 bp, which has traditionally been viewed as the NC+ domain. 33 of these mutations were previously identified as producing the NC+ phenotype while another 7 occurred at sites where NC+ mutants have been recovered, but involved a new base substitution. 9 mutants involved new sites. An additional 25 mutants located downstream of the presumed NC+ region were also found to be NC+ as determined by their blue colour on X-gal plates. Of these, 18 occurred in the 209-360-bp region. In parallel, 54 lacI mutants carrying unknown mutations were examined. 37 of these produced blue colonies in this assay. The sequencing of these mutants revealed that 20 (54%) of the 37 mutants were located in the 32-208-bp region. This complementation assay can potentially reduce the amount of DNA sequencing necessary to produce a mutational spectrum by optimising the choice of sequencing primers, and thus provide a significant saving of the material and time required. Furthermore, evidence indicates that the restriction of the mutational target to the NC+ region extends these savings without reducing the usefulness of the mutational specificity data.

摘要

携带大肠杆菌lacI基因作为基于λ噬菌体的穿梭载体中突变靶点的“大蓝”转基因小鼠,在遗传毒性测试中受到越来越多的关注,因为它提供了在哺乳动物体内系统研究突变的潜力。该系统不仅能提供有关突变频率的信息,还具有提供有关突变特异性信息的潜力。这些数据不仅对突变机制的研究很重要;对于在尚未发现突变频率显著增加的水平上确定突变反应而言,它具有关键优势。然而,对整个1080bp的lacI靶点进行重复测序仍然是一项艰巨的任务。在此,我们报告了对lacI-d表型的“负互补”试验进行改进,以适应从“大蓝”转基因动物中回收的λ噬菌体lacI。该试验可将突变定位到大约330bp的区域,以促进突变特异性数据的产生。该试验基于将含有lacI突变的λ噬菌体溶源化到lacI+宿主中。从“大蓝”小鼠中回收的107个测序lacI突变体中,使用该试验鉴定出74个为NC+(lacI-d)。在这74个中,49个发生在32-208bp区域,该区域传统上被视为NC+结构域。这些突变中有33个先前被鉴定为产生NC+表型,另外7个发生在已回收NC+突变体的位点,但涉及新的碱基替换。9个突变体涉及新位点。通过它们在X-gal平板上的蓝色,还发现另外25个位于假定的NC+区域下游的突变体也是NC+。其中,18个发生在209-360bp区域。同时,检查了54个携带未知突变的lacI突变体。在该试验中,其中37个产生蓝色菌落。对这些突变体的测序表明,37个突变体中的20个(54%)位于32-208bp区域。这种互补试验有可能通过优化测序引物的选择来减少产生突变谱所需的DNA测序量,从而显著节省所需的材料和时间。此外,有证据表明,将突变靶点限制在NC+区域可在不降低突变特异性数据有用性的情况下进一步节省资源。

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