Nehrke K W, Platt T
Department of Biochemistry, University of Rochester Medical Center, Rochester, NY 14642.
J Mol Biol. 1994 Nov 11;243(5):830-9. doi: 10.1006/jmbi.1994.1685.
The Escherichia coli protein NusG is known to modulate Rho-dependent transcription termination in vivo. We have shown that it can also alter the pattern of Rho-dependent RNA endpoints in vitro, at lower NusG concentrations than can be explained by reported interactions between NusG and Rho or RNA polymerase. Three observations in vitro now suggest a model to account for these effects of NusG on Rho-dependent termination. First, the presence of NusG circumvents the interference with Rho function caused by adding DNA oligonucleotides complementary to particular segments of the Rho binding site. Second, when NusG is added to stalled elongation complexes, the off-rate of Rho from nascent RNA is slowed. Third, NusG associates stably with the elongation complex only when Rho is also present and bound to the nascent RNA. Our observations are consistent with a model in which NusG and Rho participate in an interdependent association with the transcribing RNA polymerase and the nascent RNA to facilitate the recognition and use of termination signals. Common structural and functional features shared with complexes that carry out processive antitermination are discussed.
已知大肠杆菌蛋白NusG在体内可调节Rho依赖性转录终止。我们已经表明,在体外,在比报道的NusG与Rho或RNA聚合酶之间的相互作用所能解释的更低的NusG浓度下,它也能改变Rho依赖性RNA端点的模式。现在体外的三个观察结果提示了一个模型来解释NusG对Rho依赖性终止的这些作用。第一,NusG的存在规避了因添加与Rho结合位点特定片段互补的DNA寡核苷酸而对Rho功能造成的干扰。第二,当将NusG添加到停滞的延伸复合物中时,Rho从新生RNA上解离的速率减慢。第三,仅当Rho也存在并结合到新生RNA上时,NusG才与延伸复合物稳定结合。我们的观察结果与一个模型一致,即NusG和Rho与正在转录的RNA聚合酶和新生RNA参与相互依赖的结合,以促进终止信号的识别和利用。文中讨论了与进行持续性抗终止的复合物共有的常见结构和功能特征。