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温度敏感型质粒复制的数学模型

Mathematical model of temperature-sensitive plasmid replication.

作者信息

Leipold R J, Krewson C E, Dhurjati P

机构信息

Department of Chemical Engineering, University of Delaware, Newark 19716.

出版信息

Plasmid. 1994 Sep;32(2):131-67. doi: 10.1006/plas.1994.1052.

Abstract

The copy number of a series of plasmids constructed at Odense University is regulated by the lambda PR/PRM promoters and the temperature-sensitive cI857 repressor. At low temperatures, these plasmids exhibit the low copy number of the parent plasmid R1 (5-6 per cell). At high temperatures, the plasmids exhibit runaway replication, reaching copy numbers of greater than 1,000 per cell. A detailed mathematical model of the temperature-sensitive replication of these plasmids has been developed incorporating three features: replication of the parent plasmid, regulation of the lambda PR/PRM promoters by the cI repressor, and thermal denaturation of the cI857 repressor. Models of the first two of these features have been described by others. We revised and extended those models, described the thermal denaturation of the cI857 repressor, and integrated these features to give a comprehensive model of temperature-sensitive plasmid replication. Model predictions were compared to experimental measurements of both steady-state copy numbers as a function of temperature and the change in copy number following temperature shifts up and down. The model accurately describes the qualitative behavior of the system and gives reasonable quantitative results. This is particularly significant since all the parameter values used in this model were determined independently: that is, there was no adjustment of parameter values to match our experimental data. The regulatory system that gives rise to the temperature-sensitive replication of these plasmids is widely used in biotechnology applications, so the elements of the model related to this regulation should be applicable to a wide variety of systems.

摘要

奥胡斯大学构建的一系列质粒的拷贝数受λPR/PRM启动子和温度敏感型cI857阻遏物调控。在低温下,这些质粒表现出亲本质粒R1的低拷贝数(每个细胞5 - 6个)。在高温下,质粒表现出失控复制,每个细胞的拷贝数超过1000个。已开发出这些质粒温度敏感型复制的详细数学模型,该模型包含三个特征:亲本质粒的复制、cI阻遏物对λPR/PRM启动子的调控以及cI857阻遏物的热变性。前两个特征的模型已由其他人描述过。我们对这些模型进行了修订和扩展,描述了cI857阻遏物的热变性,并整合这些特征以给出温度敏感型质粒复制的综合模型。将模型预测结果与作为温度函数的稳态拷贝数以及温度上下变化后拷贝数变化的实验测量结果进行了比较。该模型准确描述了系统的定性行为,并给出了合理的定量结果。这一点尤为重要,因为该模型中使用的所有参数值都是独立确定的:也就是说,没有为匹配我们的实验数据而调整参数值。导致这些质粒温度敏感型复制的调控系统在生物技术应用中广泛使用,因此与该调控相关的模型要素应适用于多种系统。

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