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基于淡水属Ophioceras和Pseudohalonectria的核糖体DNA序列的系统发育目级分类。

Phylogenetic ordinal placement based on rDNA sequences of the freshwater genera Ophioceras and Pseudohalonectria.

作者信息

Chen W, Shearer C A, Klopp J

机构信息

Illinois Natural History Survey, Champaign 61820, USA.

出版信息

Exp Mycol. 1995 Sep;19(3):191-201. doi: 10.1006/emyc.1995.1024.

Abstract

The ordinal placement of two closely related freshwater genera, Ophioceras and Pseudohalonectria, was assessed by using phylogenetic analysis of morphological characters, partial sequences of the large subunit ribosomal DNA and restriction site variations in the internal transcribed spacer (ITS). The two genera have some morphological features that are used to define taxa in both the Sordariales and Diaporthales, and, hence, their phylogenetic relationships are unclear. Equally weighted analyses of thirty-eight morphological characters produced unresolved phylogenetic trees and unequivocal conclusions could not be drawn based on the morphological data. The polymerase chain reaction-amplified ITS region was variable in length between the two genera and restriction sites in the ITS region were determined. Analysis of variation in restriction sites in the ITS region placed Ophioceras and Pseudohalonectria in one clade with taxa sampled from Sordariales. About 350 basepairs of DNA sequence from the 5' end of the large subunit rDNA were also determined. In phylogenetic analysis of the sequence data with Hypocrea lutea and Nectria cinnabarina as outgroups, Ophioceras and Pseudohalonectria showed a closer relationship to Neurospora crassa, Schizothecium sp., and Sordaria fimicola of the Sordariales than to Cryphonectria parasitica and Endothia gyrosa of the Diaporthales.

摘要

通过对形态特征、大亚基核糖体DNA的部分序列以及内部转录间隔区(ITS)的限制性位点变异进行系统发育分析,评估了两个密切相关的淡水属——蛇形角菌属(Ophioceras)和拟卤小穴壳菌属(Pseudohalonectria)的序数排列。这两个属具有一些形态特征,这些特征被用于定义肉座菌目和间座壳目两个目中的分类单元,因此,它们的系统发育关系尚不清楚。对38个形态特征进行同等加权分析,得到了未解析的系统发育树,无法根据形态学数据得出明确结论。聚合酶链反应扩增的ITS区域在这两个属之间长度可变,并确定了ITS区域的限制性位点。对ITS区域限制性位点变异的分析将蛇形角菌属和拟卤小穴壳菌属与从肉座菌目中采样的分类单元置于一个进化枝中。还确定了来自大亚基rDNA 5'端的约350个碱基对的DNA序列。在以黄绿木霉(Hypocrea lutea)和朱砂红菌素(Nectria cinnabarina)为外类群的序列数据系统发育分析中,蛇形角菌属和拟卤小穴壳菌属与肉座菌目的粗糙脉孢菌(Neurospora crassa)、裂丝菌属(Schizothecium sp.)和粪生粪壳菌(Sordaria fimicola)显示出比与间座壳目的寄生隐孢壳菌(Cryphonectria parasitica)和旋孢腔菌(Endothia gyrosa)更密切的关系。

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