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利用人工免疫系统识别启动子序列。

Recognising promoter sequences using an artificial immune system.

作者信息

Cooke D E, Hunt J E

机构信息

Department of Computer Science, University of Wales, Aberystwyth, Dyfed, U.K.

出版信息

Proc Int Conf Intell Syst Mol Biol. 1995;3:89-97.

PMID:7584471
Abstract

We have developed an artificial immune system (AIS) which is based on the human immune system. The AIS possesses an adaptive learning mechanism which enables antibodies to emerge which can be used for classification tasks. In this paper, we describe how the AIS has been used to evolve antibodies which can classify promoter containing and promoter negative DNA sequences. The DNA sequences used for teaching were 57 nucleotides in length and contained procaryotic promoters. The system classified previously unseen DNA sequences with an accuracy of approximately 90%.

摘要

我们开发了一种基于人类免疫系统的人工免疫系统(AIS)。该AIS拥有一种自适应学习机制,能够产生可用于分类任务的抗体。在本文中,我们描述了如何使用AIS来进化出能够对含有启动子和不含启动子的DNA序列进行分类的抗体。用于训练的DNA序列长度为57个核苷酸,包含原核启动子。该系统对之前未见过的DNA序列进行分类的准确率约为90%。

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