Kavanaugh J S, Chafin D R, Arnone A, Mozzarelli A, Rivetti C, Rossi G L, Kwiatkowski L D, Noble R W
Department of Biochemistry, University of Iowa, Iowa City 52242, USA.
J Mol Biol. 1995 Apr 21;248(1):136-50. doi: 10.1006/jmbi.1995.0207.
The correlation of a protein structure determined crystallographically to its functional properties determined in solution can be an extremely complex problem due to potential differences of protein conformational flexibility in the two physical states. A more direct approach to the correlation of structure with function is to examine both the structure and the function of a protein in the same crystalline environment. In this paper, the structural and functional properties of T state desArg hemoglobin (human hemoglobin modified by removal of the alpha-chain COOH-terminal residue, Arg141 alpha) have been studied in the same crystal form by high resolution X-ray diffraction methods and by polarized absorption microspectrophotometry. Specifically, the crystal structure of deoxygenated desArg human hemoglobin has been refined at a 2.1 A resolution using crystals grown at low salt concentration from solutions of polyethylene glycol. The loss of Arg141 alpha and all of the salt bridges in which it participates is associated with subtle structural perturbations of the alpha-chains which include an increase in the conformational flexibility of both the NH2 and COOH-terminal peptides. Although the heme pockets appear unchanged and even the side-chain of Tyr140 is oriented nearly as in HbA, the functional characterization by microspectrophotometric measurements indicates that crystals of desArg hemoglobin bind oxygen with an affinity which is roughly 15-fold greater than that of crystals of human hemoglobin A. There is no alkaline Bohr effect or effect of chloride ions, but an acid Bohr effect is observed. The oxygen affinities measured along two principal axes of the crystals differ by 25%, indicating heterogeneity in the affinities of the oxygen binding sites. This finding and the measured Hill coefficient of unity suggest significant cooperativity in the binding of oxygen in these crystals. The origins of the observed heterogeneity and the implied cooperativity are unknown.
由于蛋白质在两种物理状态下构象灵活性存在潜在差异,通过晶体学确定的蛋白质结构与其在溶液中确定的功能特性之间的相关性可能是一个极其复杂的问题。将结构与功能相关联的一种更直接方法是在相同的晶体环境中同时研究蛋白质的结构和功能。在本文中,通过高分辨率X射线衍射方法和偏振吸收显微分光光度法,以相同的晶体形式研究了T态去精氨酸血红蛋白(通过去除α链COOH末端残基Arg141α修饰的人血红蛋白)的结构和功能特性。具体而言,使用从聚乙二醇溶液在低盐浓度下生长的晶体,以2.1埃分辨率精修了脱氧去精氨酸人血红蛋白的晶体结构。Arg141α及其参与的所有盐桥的缺失与α链的细微结构扰动相关,其中包括NH2和COOH末端肽段构象灵活性的增加。尽管血红素口袋似乎未变,甚至Tyr140的侧链取向也几乎与HbA中一样,但通过显微分光光度测量进行的功能表征表明,去精氨酸血红蛋白晶体结合氧气的亲和力大约是人血红蛋白A晶体的15倍。不存在碱性玻尔效应或氯离子效应,但观察到酸性玻尔效应。沿着晶体的两个主轴测量的氧亲和力相差25%,表明氧结合位点的亲和力存在异质性。这一发现以及测得的希尔系数为1表明这些晶体中氧结合存在显著的协同性。观察到的异质性和隐含的协同性的起源尚不清楚。