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基于含脯氨酸的甘氨酸肽的13C多重核磁共振弛豫推导的环皱曲和主链动力学

13C multiplet nuclear magnetic resonance relaxation-derived ring puckering and backbone dynamics in proline-containing glycine-based peptides.

作者信息

Mikhailov D, Daragan V A, Mayo K H

机构信息

Department of Biochemistry, University of Minnesota Health Sciences Center, Minneapolis 55455, USA.

出版信息

Biophys J. 1995 Apr;68(4):1540-50. doi: 10.1016/S0006-3495(95)80326-7.

Abstract

13CH2-multiplet nuclear magnetic resonance relaxation studies on proline (P)-containing glycine (G)-based peptides, GP, PG, GPG, PGG, and GPGG, provided numerous dipolar auto- and cross-correlation times for various motional model analyses of backbone and proline-ring bond rotations. Molecular dynamics simulations and bond rotation energy profiles were calculated to assess which motions could contribute most to observed relaxation phenomena. Results indicate that proline restricts backbone psi 1, psi 2, and phi 2 motions by 50% relative to those found for a polyglycine control peptide. psi 1 rotations are more restricted in the trans-proline isomer state than in the cis form. A two-state jump model best approximates proline ring puckering which in water could occur either by the C gamma endo-exo or by the C2 interconversion mechanism. The temperature dependence (5 degrees to 75 degrees C) of C beta, and C gamma, and C delta angular changes is rather flat, suggesting a near zero enthalpic contribution to the ring puckering process. In lower dielectric solvents, dimethylsulfoxide and methanol, which may mimic the hydrophobic environment within a protein, the endo-exo mechanism is preferred.

摘要

对含脯氨酸(P)的甘氨酸(G)基肽GP、PG、GPG、PGG和GPGG进行的¹³CH₂多峰核磁共振弛豫研究,为骨架和脯氨酸环键旋转的各种运动模型分析提供了大量偶极自相关和交叉相关时间。计算了分子动力学模拟和键旋转能量分布,以评估哪些运动对观察到的弛豫现象贡献最大。结果表明,相对于聚甘氨酸对照肽,脯氨酸使骨架的ψ₁、ψ₂和φ₂运动受限50%。ψ₁旋转在反式脯氨酸异构体状态下比在顺式状态下受到的限制更大。双态跳跃模型最能近似脯氨酸环的褶皱,在水中,脯氨酸环的褶皱可能通过Cγ内-外或C2互变机制发生。Cβ、Cγ和Cδ角变化的温度依赖性(5℃至75℃)相当平缓,表明对环褶皱过程的焓贡献接近零。在较低介电常数的溶剂二甲基亚砜和甲醇中,它们可能模拟蛋白质内部的疏水环境,内-外机制更为可取。

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