EXTRACT: a program to extract three-dimensional coordinates from stereo diagrams of proteins.
作者信息
Oldfield T J, Hubbard R E
机构信息
Department of Chemistry, University of York, Heslington, U.K.
出版信息
J Mol Graph. 1995 Feb;13(1):18-23, 52. doi: 10.1016/0263-7855(94)00006-e.
PMID:7794829
Abstract
The program EXTRACT has been developed to extract accurate three-dimensional coordinates from published stereo alpha-carbon diagrams of protein structures. The approach is based on the display of scanned images of the left and right eye views of the diagram on a stereo-equipped workstation, allowing construction of a molecular model using the diagram as a guide. A number of structural checks assess the building, including probability maps derived for alpha-carbon geometry in protein structures. The procedure has also been extended to produce less accurate models from mono images.
摘要
相似文献
1
EXTRACT: a program to extract three-dimensional coordinates from stereo diagrams of proteins.
J Mol Graph. 1995 Feb;13(1):18-23, 52. doi: 10.1016/0263-7855(94)00006-e.
2
Improved coordinate reconstruction from stereo diagrams.
J Mol Graph. 1996 Jun;14(3):168-72. doi: 10.1016/s0263-7855(96)00055-0.
3
Building protein diagrams on the web with the residue-based diagram editor RbDe.使用基于残基的图表编辑器RbDe在网络上构建蛋白质图表。
Nucleic Acids Res. 2003 Jul 1;31(13):3856-8. doi: 10.1093/nar/gkg552.
4
Reconstruction of the 3D coordinates of alpha-carbon atoms of proteins from a pair of stereographic figures.从一对立体图重建蛋白质α-碳原子的三维坐标。
J Comput Aided Mol Des. 1996 Dec;10(6):558-66. doi: 10.1007/BF00134179.
5
Microcomputer-based three-dimensional stereoscopic macromolecular graphics display.基于微型计算机的三维立体大分子图形显示
Comput Appl Biosci. 1988 Mar;4(1):193-6. doi: 10.1093/bioinformatics/4.1.193.
6
MOLECULAR DESIGNER: an interactive program for the display of protein structure on the IBM-PC.分子设计器：一款用于在IBM个人电脑上展示蛋白质结构的交互式程序。
Comput Appl Biosci. 1985 Sep;1(3):177-81. doi: 10.1093/bioinformatics/1.3.177.
7
NanoVision--molecular graphics for the Macintosh.NanoVision——适用于麦金塔电脑的分子图形软件。
J Mol Graph. 1994 Sep;12(3):172-7, 194. doi: 10.1016/0263-7855(94)80084-7.
8
MolView: a program for analyzing and displaying atomic structures on the Macintosh personal computer.MolView：一款用于在苹果麦金塔个人电脑上分析和显示原子结构的程序。
J Mol Graph. 1995 Apr;13(2):122-5, 115. doi: 10.1016/0263-7855(94)00019-o.
9
Representing structural information with RasMol.使用RasMol呈现结构信息。
Curr Protoc Bioinformatics. 2005 Oct;Chapter 5:Unit 5.4. doi: 10.1002/0471250953.bi0504s11.
10
XELE--a polypeptide model-building program for a graphics workstation.XELE——一款用于图形工作站的多肽模型构建程序。
J Mol Graph. 1992 Sep;10(3):185-9, 165. doi: 10.1016/0263-7855(92)80054-h.
引用本文的文献
1
The reconstruction of atomic co-ordinates from a protein stereo ribbon diagram when additional information for sufficient sidechain positions is available.当有足够侧链位置的额外信息时，从蛋白质立体带状图重建原子坐标。
J Comput Aided Mol Des. 1998 Nov;12(6):605-14. doi: 10.1023/a:1008016826140.
2
Reconstruction of the 3D coordinates of alpha-carbon atoms of proteins from a pair of stereographic figures.从一对立体图重建蛋白质α-碳原子的三维坐标。
J Comput Aided Mol Des. 1996 Dec;10(6):558-66. doi: 10.1007/BF00134179.
Zotero 插件