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QMView:一款处于分子与人类界面的计算化学三维可视化工具。

QMView: a computational chemistry three-dimensional visualization tool at the interface between molecules and mankind.

作者信息

Baldridge K K, Greenberg J P

机构信息

San Diego Supercomputer Center, CA 92186-9784, USA.

出版信息

J Mol Graph. 1995 Feb;13(1):63-6, 61. doi: 10.1016/0263-7855(94)00002-a.

Abstract

QMView is designed to facilitate the visualization and interpretation of quantum mechanical data. Capabilities include display of chemical structure, animation of quantum mechanically determined vibrational modes, and depiction of electronic properties and three-dimensional molecular orbitals. QMView has a user-friendly interface that allows users to interactively manipulate many features of the molecular structure and/or property, including positioning and structure representation, via mouse-activated dialog boxes. Although the interface allows input from results of any of the popularly used quantum mechanical software, we have focused on GAMESS, a widely distributed quantum chemistry code. QMView has been designed with the special feature of working in distributed mode with GAMESS, the latter running on a supercomputer, the former running on a Silicon Graphics platform. Ancillary programs provide a method of obtaining output of graphic images in various media, including hardcopy, PostScript files, slide, and/or video. These and other original features discussed in this article provide a graphic interface that is unique compared to others that are currently available. Examples of images produced by QMView are presented.

摘要

QMView旨在促进量子力学数据的可视化和解释。其功能包括化学结构显示、量子力学确定的振动模式动画、电子性质描绘以及三维分子轨道描绘。QMView拥有用户友好的界面,允许用户通过鼠标激活的对话框交互式地操纵分子结构和/或性质的许多特征,包括定位和结构表示。虽然该界面允许输入任何常用量子力学软件的结果,但我们重点关注了GAMESS,这是一个广泛分布的量子化学代码。QMView设计了与GAMESS以分布式模式工作的特殊功能,后者在超级计算机上运行,前者在硅图形平台上运行。辅助程序提供了一种在各种介质(包括硬拷贝、PostScript文件、幻灯片和/或视频)中获取图形图像输出的方法。本文讨论的这些以及其他原始功能提供了一个与当前可用的其他界面相比独一无二的图形界面。展示了QMView生成的图像示例。

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